HL_4V6P_104

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_104 not in the Motif Atlas

Geometric match to HL_3IGI_006

Geometric discrepancy: 0.1495

The information below is about HL_3IGI_006

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V6P|1|BB|C|2658
4V6P|1|BB|G|2659
4V6P|1|BB|A|2660
4V6P|1|BB|G|2661
4V6P|1|BB|A|2662
4V6P|1|BB|G|2663

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6