3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
UUUAA
Length
5 nucleotides
Bulged bases
4V6P|1|BB|A|2799
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6P_107 not in the Motif Atlas
Geometric match to HL_4V88_192
Geometric discrepancy: 0.215
The information below is about HL_4V88_192
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_43793.1
Basepair signature
cWW-F
Number of instances in this motif group
50

Unit IDs

4V6P|1|BB|U|2796
4V6P|1|BB|U|2797
4V6P|1|BB|U|2798
4V6P|1|BB|A|2799
4V6P|1|BB|A|2800

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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