HL_4V6P_108

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGAAGACGACG

Length

11 nucleotides

Bulged bases

4V6P|1|BB|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|U|2818
4V6P|1|BB|G|2819
4V6P|1|BB|A|2820
4V6P|1|BB|A|2821
4V6P|1|BB|G|2822
4V6P|1|BB|A|2823
4V6P|1|BB|C|2824
4V6P|1|BB|G|2825
4V6P|1|BB|A|2826
4V6P|1|BB|C|2827
4V6P|1|BB|G|2828

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BP

50S ribosomal protein L17

Chain BR

50S ribosomal protein L19