HL_4V6P_116

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

AUGCCAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_116 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3611

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V6P|1|BB|A|2700
4V6P|1|BB|U|2701
4V6P|1|BB|G|2702
4V6P|1|BB|C|2703
4V6P|1|BB|C|2704
4V6P|1|BB|A|2705
4V6P|1|BB|A|2706
4V6P|1|BB|U|2707

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L17