3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
AUGCCAAU
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6P_116 not in the Motif Atlas
Geometric match to HL_1KH6_003
Geometric discrepancy: 0.3611
The information below is about HL_1KH6_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_05426.1
Basepair signature
cWW-F-F
Number of instances in this motif group
2

Unit IDs

4V6P|1|BB|A|2700
4V6P|1|BB|U|2701
4V6P|1|BB|G|2702
4V6P|1|BB|C|2703
4V6P|1|BB|C|2704
4V6P|1|BB|A|2705
4V6P|1|BB|A|2706
4V6P|1|BB|U|2707

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain BP
50S ribosomal protein L17

Coloring options:


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