HL_4V6P_118

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

4V6P|1|BB|C|645

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_118 not in the Motif Atlas

Homologous match to HL_9DFE_019

Geometric discrepancy: 0.5042

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V6P|1|BB|U|641
4V6P|1|BB|U|642
4V6P|1|BB|A|643
4V6P|1|BB|A|644
4V6P|1|BB|C|645
4V6P|1|BB|U|646
4V6P|1|BB|G|647

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L33

Chain B6

50S ribosomal protein L35