HL_4V6Q_005

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V6Q|1|AA|U|209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_005 not in the Motif Atlas

Homologous match to HL_5J7L_005

Geometric discrepancy: 0.4141

The information below is about HL_5J7L_005

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V6Q|1|AA|C|207
4V6Q|1|AA|U|208
4V6Q|1|AA|U|209
4V6Q|1|AA|C|210
4V6Q|1|AA|G|211
4V6Q|1|AA|G|212

Current chains

Chain AA

16S ribosomal RNA

Nearby chains