RNA 3D Hub //

4V6Q Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V6Q_0011/AA/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_4V6Q_1101/AA/81:88No text annotation
homologous
HL_6CZR_073
NA
HL_4V6Q_0021/AA/82:87No text annotation
HL_4V6Q_0031/AA/158:163GNRA
homologous
HL_5J7L_003
HL_37824.8
HL_4V6Q_0041/AA/186:191GNRA
homologous
HL_5J7L_004
HL_37824.8
HL_4V6Q_0051/AA/207:212UNCG
homologous
HL_5J7L_005
HL_34617.5
HL_4V6Q_0061/AA/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_4V6Q_0071/AA/296:301GNRA
homologous
HL_5J7L_007
HL_37824.8
HL_4V6Q_0081/AA/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_4V6Q_0091/AA/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_4V6Q_0101/AA/379:384No text annotation
geometric
HL_8C3A_054
NA
HL_4V6Q_0111/AA/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_4V6Q_0121/AA/462:470No text annotation
HL_4V6Q_1121/AA/522:527GNRA variation
homologous
HL_5J7L_205
HL_37824.8
HL_4V6Q_0141/AA/617:623GNRA-like with tWH
homologous
HL_5J7L_014
HL_10453.3
HL_4V6Q_0151/AA/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_4V6Q_0161/AA/726:731No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_4V6Q_1131/AA/786:796No text annotation
HL_4V6Q_0181/AA/840:846No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_4V6Q_0191/AA/862:867GNRA
homologous
HL_4LFB_019
HL_37824.8
HL_4V6Q_0201/AA/897:902GNRA
homologous
HL_4LFB_020
HL_37824.8
HL_4V6Q_0211/AA/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_4V6Q_0221/AA/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.8
HL_4V6Q_0231/AA/1028:1033UNCG
geometric
HL_1I6U_001
HL_34617.5
HL_4V6Q_1241/AA/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.8
HL_4V6Q_0251/AA/1089:1096T-loop related
homologous
HL_5J7L_024
HL_77436.5
HL_4V6Q_0261/AA/1134:1140No text annotation
HL_4V6Q_0271/AA/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.8
HL_4V6Q_0281/AA/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.8
HL_4V6Q_0291/AA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
HL_02887.3
HL_4V6Q_0301/AA/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_4V6Q_0311/AA/1449:1454UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_4V6Q_0321/AA/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_4V6Q_0331/AB/13:22tRNA D-loop
homologous
HL_4V9K_033
HL_48417.6
HL_4V6Q_1251/AB/31:39tRNA anticodon loop
homologous
HL_6UFH_007
HL_06059.7
HL_4V6Q_1261/AB/53:61No text annotation
HL_4V6Q_0361/AD/13:23No text annotation
homologous
HL_4YYE_001
NA
HL_4V6Q_0371/AD/32:40tRNA anticodon loop
homologous
HL_6UFM_002
HL_06059.7
HL_4V6Q_0381/AD/54:62T-loop with 2 stacked bulged bases
homologous
HL_3KFU_006
HL_28252.9
HL_4V6Q_0391/BA/34:48No text annotation
homologous
HL_9DFE_067
HL_97756.2
HL_4V6Q_0401/BA/85:91Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_4V6Q_0411/BB/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_93438.2
HL_4V6Q_1151/BB/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_4V6Q_0431/BB/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_4V6Q_0441/BB/137:142UNCG
geometric
HL_6CK5_001
HL_34617.5
HL_4V6Q_0451/BB/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_4V6Q_1161/BB/188:208No text annotation
HL_4V6Q_0461/BB/194:201No text annotation
homologous
HL_7RQB_006
NA
HL_4V6Q_0471/BB/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_4V6Q_0481/BB/246:252No text annotation
homologous
HL_4WF9_008
HL_37369.2
HL_4V6Q_0491/BB/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_4V6Q_0501/BB/319:323No text annotation
homologous
HL_5J7L_143
HL_75660.5
HL_4V6Q_0511/BB/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_4V6Q_1271/BB/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_4V6Q_1171/BB/410:417No text annotation
homologous
HL_9DFE_013
HL_30680.3
HL_4V6Q_0541/BB/462:467GNRA
homologous
HL_7RQB_015
NA
HL_4V6Q_0551/BB/487:493GNRA
homologous
HL_4WF9_016
HL_37824.8
HL_4V6Q_0561/BB/543:550No text annotation
HL_4V6Q_1181/BB/564:577No text annotation
HL_4V6Q_0571/BB/566:575No text annotation
HL_4V6Q_0581/BB/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_4V6Q_0591/BB/629:634GNRA
homologous
HL_5J7L_152
HL_37824.8
HL_4V6Q_1281/BB/641:647GNRA
homologous
HL_9DFE_019
HL_37824.8
HL_4V6Q_0611/BB/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4V6Q_0621/BB/744:753No text annotation
homologous
HL_5J7L_155
HL_88205.2
HL_4V6Q_0631/BB/779:785UNCG variation
geometric
HL_1P6V_001
HL_53890.2
HL_4V6Q_0641/BB/825:832No text annotation
geometric
HL_5TBW_012
NA
HL_4V6Q_0651/BB/885:891No text annotation
HL_4V6Q_1201/BB/955:962GNRA
homologous
HL_5J7L_211
HL_37824.8
HL_4V6Q_0671/BB/978:985No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_4V6Q_0681/BB/1064:1074No text annotation
homologous
HL_6PRV_001
HL_19210.3
HL_4V6Q_0691/BB/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_4V6Q_0701/BB/1172:1177Externally structured
geometric
HL_8C3A_022
NA
HL_4V6Q_0711/BB/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.8
HL_4V6Q_0721/BB/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.9
HL_4V6Q_0731/BB/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_7A0S_033
HL_57176.2
HL_4V6Q_0741/BB/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.8
HL_4V6Q_0751/BB/1389:1398No text annotation
homologous
HL_7A0S_035
HL_81545.2
HL_4V6Q_0761/BB/1450:1461No text annotation
HL_4V6Q_0771/BB/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_4V6Q_0781/BB/1533:1538UNCG
homologous
HL_5J7L_171
HL_34617.5
HL_4V6Q_0791/BB/1565:1568No text annotation
HL_4V6Q_0801/BB/1612:1619No text annotation
homologous
HL_5J7L_173
HL_89567.2
HL_4V6Q_1211/BB/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.8
HL_4V6Q_0821/BB/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_4V6Q_0831/BB/1728:1731Mini UNCG related
geometric
HL_6AJK_001
HL_56334.1
HL_4V6Q_0841/BB/1752:1756No text annotation
homologous
HL_5J7L_177
HL_80709.3
HL_4V6Q_0851/BB/1777:1787No text annotation
HL_4V6Q_0861/BB/1806:1811No text annotation
homologous
HL_4WF9_044
NA
HL_4V6Q_0871/BB/1868:1873GNRA
geometric
HL_6CZR_090
NA
HL_4V6Q_0881/BB/1910:1920No text annotation
homologous
HL_5J7L_181
HL_25847.2
HL_4V6Q_0891/BB/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_4V6Q_0901/BB/2027:2036No text annotation
homologous
HL_9DFE_048
HL_61996.3
HL_4V6Q_0911/BB/2142:2149No text annotation
geometric
HL_5TBW_012
NA
HL_4V6Q_0921/BB/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_4V6Q_0931/BB/2246:2258No text annotation
HL_4V6Q_0941/BB/2264:2276No text annotation
homologous
HL_4WF9_050
HL_91939.2
HL_4V6Q_1291/BB/2303:2313No text annotation
HL_4V6Q_0961/BB/2324:2331Pseudoknot geometry
homologous
HL_7A0S_055
HL_93324.4
HL_4V6Q_0971/BB/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.8
HL_4V6Q_0981/BB/2374:2379GNRA
homologous
HL_4WF9_054
HL_37824.8
HL_4V6Q_0991/BB/2404:2413No text annotation
homologous
HL_9DFE_057
HL_53454.2
HL_4V6Q_1001/BB/2471:2479UNCG variation
geometric
HL_1P6V_001
HL_53890.2
HL_4V6Q_1011/BB/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_4V6Q_1021/BB/2551:2557No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_4V6Q_1031/BB/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_4V6Q_1041/BB/2658:2663GNRA
geometric
HL_3SUX_002
HL_37824.8
HL_4V6Q_1231/BB/2700:2707No text annotation
geometric
HL_7KI3_001
HL_75660.5
HL_4V6Q_1051/BB/2701:2706Ribsomal LSU H95
homologous
HL_7A0S_064
HL_65794.5
HL_4V6Q_1061/BB/2745:2759No text annotation
homologous
HL_7A0S_065
HL_74055.2
HL_4V6Q_1071/BB/2796:2800No text annotation
geometric
HL_7RQB_009
NA
HL_4V6Q_1081/BB/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4V6Q_1091/BB/2856:2861GNRA
homologous
HL_5J7L_202
HL_37824.8

Problematic loops

#loop idProblemSequence
HL_4V6Q_111No text annotation
HL_4V6Q_013No text annotation
HL_4V6Q_017No text annotation
HL_4V6Q_024No text annotation
HL_4V6Q_114tRNA anticodon loop
HL_4V6Q_034No text annotation
HL_4V6Q_035No text annotation
HL_4V6Q_042No text annotation
HL_4V6Q_052No text annotation
HL_4V6Q_053No text annotation
HL_4V6Q_060Anticodon loop related
HL_4V6Q_119No text annotation
HL_4V6Q_066No text annotation
HL_4V6Q_081GNRA with extra cWW
HL_4V6Q_095No text annotation
HL_4V6Q_122tRNA anticodon loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V6Q_2131/AA/30:33,
1/AA/551:553		Isolated non-canonical cWW pair
geometric
IL_8P9A_461
IL_87907.2
IL_4V6Q_2141/AA/44:45,
1/AA/396:398		Single bulged A
homologous
IL_4LFB_002
IL_31462.7
IL_4V6Q_0031/AA/47:52,
1/AA/359:361		No text annotation
homologous
IL_6CZR_115
NA
IL_4V6Q_0041/AA/54:56,
1/AA/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_4V6Q_0051/AA/63:66,
1/AA/103:104		Multiple bulged bases
homologous
IL_5J7L_005
IL_82107.5
IL_4V6Q_0061/AA/67:69,
1/AA/99:102		Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_4V6Q_0071/AA/70:73,
1/AA/97:98		Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_4V6Q_0081/AA/75:77,
1/AA/92:95		Single bulged G, near cWW
homologous
IL_5J7L_008
NA
IL_4V6Q_0091/AA/128:131,
1/AA/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_4V6Q_0101/AA/132:136,
1/AA/227:230		No text annotation
IL_4V6Q_0111/AA/137:139,
1/AA/224:226		No text annotation
geometric
IL_1NBS_006
NA
IL_4V6Q_0121/AA/144:146,
1/AA/176:178		Isolated cWH basepair
geometric
IL_6IA2_003
IL_10167.6
IL_4V6Q_1781/AA/147:153,
1/AA/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_4V6Q_0141/AA/203:207,
1/AA/212:214		No text annotation
IL_4V6Q_0151/AA/242:247,
1/AA/277:284		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_4V6Q_2151/AA/248:252,
1/AA/274:276		No text annotation
IL_4V6Q_0171/AA/292:293,
1/AA/304:308		No text annotation
IL_4V6Q_0181/AA/367:369,
1/AA/392:393		Single bulged U
geometric
IL_4V88_407
NA
IL_4V6Q_0191/AA/371:376,
1/AA/387:390		C-loop with extra cWW pair
geometric
IL_4V88_408
NA
IL_4V6Q_2161/AA/409:416,
1/AA/427:433		No text annotation
IL_4V6Q_0211/AA/440:442,
1/AA/492:497		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_4V6Q_0221/AA/446:450,
1/AA/483:488		tSH-tHW-tWW
homologous
IL_5J7L_022
IL_88269.4
IL_4V6Q_0231/AA/450:455,
1/AA/477:483		No text annotation
homologous
IL_5J7L_023
IL_70801.1
IL_4V6Q_2171/AA/457:460,
1/AA/471:475		No text annotation
IL_4V6Q_0251/AA/460:462,
1/AA/470:471		Single stack bend
geometric
IL_7KGA_006
IL_26793.1
IL_4V6Q_0261/AA/504:511,
1/AA/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_4V6Q_0271/AA/515:521,
1/AA/528:536		Kink-turn related
homologous
IL_4LFB_021
IL_54177.4
IL_4V6Q_0281/AA/569:575,
1/AA/880:881		No text annotation
homologous
IL_5J7L_026
IL_38186.6
IL_4V6Q_0291/AA/580:584,
1/AA/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_4V6Q_0301/AA/594:596,
1/AA/644:645		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_4V6Q_0311/AA/597:598,
1/AA/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_4V6Q_0321/AA/605:612,
1/AA/628:633		No text annotation
IL_4V6Q_0331/AA/654:655,
1/AA/751:754		Major groove platform; stack outside cWW
homologous
IL_5J7L_031
IL_50694.7
IL_4V6Q_0341/AA/659:660,
1/AA/745:747		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_4V6Q_0351/AA/662:666,
1/AA/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_4V6Q_0361/AA/673:678,
1/AA/712:717		No text annotation
homologous
IL_6CZR_142
NA
IL_4V6Q_0371/AA/684:688,
1/AA/699:706		Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_4V6Q_0381/AA/774:778,
1/AA/804:805		Left turn
geometric
IL_5J7L_036
IL_29346.2
IL_4V6Q_1821/AA/779:783,
1/AA/799:803		tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_4V6Q_0411/AA/887:894,
1/AA/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_4V6Q_0421/AA/925:927,
1/AA/1390:1391		Single bulged G
homologous
IL_5J7L_040
IL_00225.14
IL_4V6Q_0431/AA/933:935,
1/AA/1380:1384		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_4V6Q_1831/AA/953:954,
1/AA/1226:1228		No text annotation
IL_4V6Q_0451/AA/993:997,
1/AA/1044:1045		Minor groove platform
homologous
IL_5J7L_043
IL_47078.3
IL_4V6Q_0461/AA/998:999,
1/AA/1041:1043		Single stack bend
homologous
IL_5J7L_044
IL_26793.1
IL_4V6Q_1841/AA/1048:1051,
1/AA/1207:1209		No text annotation
homologous
IL_6CZR_153
NA
IL_4V6Q_1851/AA/1052:1056,
1/AA/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_4V6Q_0481/AA/1057:1058,
1/AA/1199:1203		Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_4V6Q_0491/AA/1060:1061,
1/AA/1195:1197		Single bulged A
homologous
IL_5J7L_049
IL_31462.7
IL_4V6Q_0501/AA/1061:1063,
1/AA/1193:1195		Isolated non-canonical cWW pair
homologous
IL_6CZR_157
NA
IL_4V6Q_0511/AA/1124:1128,
1/AA/1144:1149		No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_4V6Q_0521/AA/1129:1132,
1/AA/1142:1143		Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_4V6Q_0531/AA/1158:1161,
1/AA/1175:1181		No text annotation
homologous
IL_5J7L_053
IL_42032.1
IL_4V6Q_0541/AA/1247:1253,
1/AA/1284:1290		No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_4V6Q_0551/AA/1255:1258,
1/AA/1277:1282		No text annotation
IL_4V6Q_0561/AA/1259:1263,
1/AA/1272:1276		Double sheared with non-canonical cWW
homologous
IL_5J7L_056
IL_17948.2
IL_4V6Q_0571/AA/1303:1308,
1/AA/1329:1334		No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_4V6Q_0581/AA/1399:1401,
1/AA/1501:1504		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_4V6Q_1871/AA/1399:1404,
1/AA/1497:1504		No text annotation
IL_4V6Q_0591/AA/1401:1404,
1/AA/1497:1501		No text annotation
homologous
IL_5J7L_059
IL_65718.4
IL_4V6Q_1881/AA/1405:1407,
1/AA/1494:1496		Isolated non-canonical cWW pair
homologous
IL_5J7L_363
IL_87907.2
IL_4V6Q_1891/AA/1407:1409,
1/AA/1491:1494		Decoding loop related
geometric
IL_2O3X_003
IL_31737.3
IL_4V6Q_0611/AA/1412:1416,
1/AA/1484:1488		No text annotation
geometric
IL_5TBW_121
NA
IL_4V6Q_1901/AA/1416:1420,
1/AA/1480:1484		No text annotation
IL_4V6Q_0631/AA/1430:1435,
1/AA/1466:1470		Triple sheared related
geometric
IL_5J7L_063
IL_80231.1
IL_4V6Q_2181/AA/1439:1443,
1/AA/1459:1462		No text annotation
geometric
IL_5J7L_059
IL_65718.4
IL_4V6Q_0651/AA/1445:1448,
1/AA/1455:1457		No text annotation
homologous
IL_5J7L_065
IL_31531.3
IL_4V6Q_0661/BA/17:18,
1/BA/65:67		Major groove intercalation
homologous
IL_7RQB_111
NA
IL_4V6Q_0671/BA/23:28,
1/BA/56:60		No text annotation
homologous
IL_7A0S_103
IL_18472.4
IL_4V6Q_0681/BA/30:31,
1/BA/51:54		Minor groove platform
geometric
IL_3MXH_005
IL_15052.4
IL_4V6Q_0691/BA/71:79,
1/BA/97:105		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_4V6Q_1921/BB/23:30,
1/BB/510:517		No text annotation
IL_4V6Q_0701/BB/24:30,
1/BB/510:516		Triple sheared with non-canonical cWW
geometric
IL_7RQB_001
NA
IL_4V6Q_0711/BB/36:37,
1/BB/442:444		Single bulged A
homologous
IL_7A0S_002
IL_31462.7
IL_4V6Q_0721/BB/43:44,
1/BB/434:436		Minor groove platform
homologous
IL_7RQB_003
NA
IL_4V6Q_0731/BB/80:85,
1/BB/97:106		No text annotation
IL_4V6Q_0741/BB/188:194,
1/BB/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_4V6Q_0751/BB/239:245,
1/BB/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_4V6Q_0761/BB/269:271,
1/BB/366:370		No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_4V6Q_0771/BB/274:281,
1/BB/359:363		No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_4V6Q_1931/BB/293:295,
1/BB/343:347		No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_4V6Q_0791/BB/481:484,
1/BB/496:509		No text annotation
geometric
IL_5J7L_255
IL_81516.2
IL_4V6Q_0801/BB/536:539,
1/BB/554:557		Double sheared
homologous
IL_4WF9_016
IL_09705.15
IL_4V6Q_0811/BB/564:566,
1/BB/575:577		No text annotation
homologous
IL_7RQB_015
NA
IL_4V6Q_0821/BB/606:610,
1/BB/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_4V6Q_2191/BB/672:674,
1/BB/806:808		Isolated non-canonical cWW pair
homologous
IL_5J7L_259
IL_87907.2
IL_4V6Q_0841/BB/674:678,
1/BB/799:806		tHW-tHW cross-strand stack
homologous
IL_5J7L_260
IL_54041.2
IL_4V6Q_0861/BB/697:698,
1/BB/763:765		Single bulged A
homologous
IL_5J7L_261
IL_31462.7
IL_4V6Q_0871/BB/702:707,
1/BB/724:730		Quadruple sheared
geometric
IL_3FTF_001
IL_06136.2
IL_4V6Q_0881/BB/738:740,
1/BB/757:758		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_4V6Q_0891/BB/775:777,
1/BB/787:791		Multiple bulged bases
homologous
IL_7RQB_023
NA
IL_4V6Q_0901/BB/843:845,
1/BB/934:935		Single stack bend
geometric
IL_5J7L_249
IL_90729.1
IL_4V6Q_0911/BB/845:848,
1/BB/930:934		No text annotation
IL_4V6Q_2201/BB/850:851,
1/BB/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_4V6Q_0931/BB/856:862,
1/BB/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_4V6Q_0941/BB/862:863,
1/BB/913:915		Minor groove platform
geometric
IL_4WF9_032
IL_51454.3
IL_4V6Q_0951/BB/864:868,
1/BB/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
IL_26222.2
IL_4V6Q_0961/BB/870:872,
1/BB/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_4V6Q_0971/BB/875:879,
1/BB/898:902		Double sheared with non-canonical cWW
homologous
IL_5J7L_274
IL_17948.2
IL_4V6Q_0981/BB/880:881,
1/BB/895:897		Major groove intercalation
geometric
IL_4WF9_071
IL_82107.5
IL_4V6Q_1001/BB/994:996,
1/BB/1159:1160		Single bulged C
homologous
IL_7A0S_032
IL_61258.15
IL_4V6Q_1011/BB/998:1002,
1/BB/1153:1157		UAA/GAN
homologous
IL_5J7L_277
IL_38507.2
IL_4V6Q_1021/BB/1004:1011,
1/BB/1150:1151		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_4V6Q_1031/BB/1011:1013,
1/BB/1149:1150		Single bulged U
homologous
IL_5J7L_279
IL_89505.4
IL_4V6Q_1041/BB/1018:1024,
1/BB/1140:1144		Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_4V6Q_1051/BB/1024:1030,
1/BB/1124:1140		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_4V6Q_1061/BB/1031:1034,
1/BB/1121:1123		Isolated non-canonical cWW pair
homologous
IL_4WF9_041
IL_57744.1
IL_4V6Q_1071/BB/1038:1041,
1/BB/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_4V6Q_1081/BB/1043:1051,
1/BB/1108:1112		Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_4V6Q_1091/BB/1059:1062,
1/BB/1076:1079		No text annotation
homologous
IL_6PRV_001
IL_92446.2
IL_4V6Q_1101/BB/1087:1090,
1/BB/1101:1102		Major groove platform
geometric
IL_3OXE_003
IL_48076.6
IL_4V6Q_2211/BB/1196:1198,
1/BB/1247:1250		No text annotation
homologous
IL_9DFE_044
IL_42997.3
IL_4V6Q_1121/BB/1202:1207,
1/BB/1239:1243		No text annotation
IL_4V6Q_1131/BB/1208:1215,
1/BB/1234:1238		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_4V6Q_1141/BB/1262:1269,
1/BB/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_4V6Q_1151/BB/1310:1313,
1/BB/1603:1604		Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_50694.7
IL_4V6Q_2221/BB/1319:1323,
1/BB/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_4V6Q_1171/BB/1351:1355,
1/BB/1376:1380		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_4V6Q_1181/BB/1357:1361,
1/BB/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_4V6Q_2231/BB/1415:1416,
1/BB/1582:1587		No text annotation
IL_4V6Q_1201/BB/1417:1421,
1/BB/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_4V6Q_2241/BB/1432:1435,
1/BB/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_4V6Q_1221/BB/1437:1440,
1/BB/1551:1555		tSH-tHW
homologous
IL_7A0S_053
IL_99646.2
IL_4V6Q_1231/BB/1468:1471,
1/BB/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_4V6Q_1971/BB/1474:1478,
1/BB/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_4V6Q_2251/BB/1481:1482,
1/BB/1507:1510		No text annotation
IL_4V6Q_1261/BB/1489:1491,
1/BB/1499:1500		Single bulged A
geometric
IL_4V9F_032
IL_31462.7
IL_4V6Q_1271/BB/1526:1529,
1/BB/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_4V6Q_1281/BB/1651:1656,
1/BB/2004:2006		No text annotation
homologous
IL_4WF9_062
IL_12566.4
IL_4V6Q_1291/BB/1663:1665,
1/BB/1995:1997		Isolated tWW turn
homologous
IL_4WF9_063
IL_67095.2
IL_4V6Q_1301/BB/1666:1669,
1/BB/1993:1994		Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA
IL_4V6Q_1991/BB/1666:1674,
1/BB/1990:1994		No text annotation
homologous
IL_9DFE_066
IL_22854.4
IL_4V6Q_1311/BB/1669:1674,
1/BB/1990:1993		Intercalated tWH
geometric
IL_7RQB_067
NA
IL_4V6Q_1321/BB/1686:1691,
1/BB/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_7A0S_063
IL_47346.2
IL_4V6Q_1331/BB/1712:1718,
1/BB/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_4V6Q_2261/BB/1720:1725,
1/BB/1735:1740		Triple sheared with non-canonical cWW
geometric
IL_7A0S_018
IL_06136.2
IL_4V6Q_1351/BB/1727:1728,
1/BB/1731:1733		Single bulged C
geometric
IL_5J7L_311
IL_61258.15
IL_4V6Q_1361/BB/1770:1771,
1/BB/1980:1982		Single bulged A
homologous
IL_4WF9_068
IL_31462.7
IL_4V6Q_1371/BB/1798:1804,
1/BB/1813:1821		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_4V6Q_1381/BB/1837:1840,
1/BB/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_4V6Q_2011/BB/1837:1842,
1/BB/1898:1903		No text annotation
IL_4V6Q_1391/BB/1840:1842,
1/BB/1898:1902		Isolated non-canonical cWW pair
geometric
IL_4KYY_002
IL_07785.1
IL_4V6Q_1401/BB/1846:1851,
1/BB/1891:1894		No text annotation
IL_4V6Q_1411/BB/1851:1860,
1/BB/1882:1891		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_4V6Q_1431/BB/1864:1867,
1/BB/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
IL_77691.5
IL_4V6Q_1441/BB/1933:1934,
1/BB/1964:1967		Major groove intercalation
geometric
IL_1U9S_003
IL_82107.5
IL_4V6Q_1451/BB/1934:1945,
1/BB/1961:1964		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_4V6Q_1461/BB/2050:2052,
1/BB/2617:2618		Major groove platform
homologous
IL_5J7L_320
IL_48076.6
IL_4V6Q_2021/BB/2054:2056,
1/BB/2612:2615		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_4V6Q_2031/BB/2067:2069,
1/BB/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_89505.4
IL_4V6Q_2041/BB/2069:2071,
1/BB/2438:2442		No text annotation
IL_4V6Q_1501/BB/2081:2083,
1/BB/2236:2239		Isolated tHS basepair with bulges
geometric
IL_5J7L_325
IL_85599.2
IL_4V6Q_1511/BB/2084:2087,
1/BB/2232:2235		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_4V6Q_1521/BB/2103:2105,
1/BB/2184:2186		Isolated near basepair
geometric
IL_4V88_406
NA
IL_4V6Q_1531/BB/2106:2110,
1/BB/2179:2183		No text annotation
IL_4V6Q_2271/BB/2110:2123,
1/BB/2175:2179		No text annotation
IL_4V6Q_2081/BB/2124:2136,
1/BB/2155:2174		No text annotation
IL_4V6Q_1541/BB/2202:2204,
1/BB/2220:2221		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_4V6Q_1551/BB/2350:2353,
1/BB/2364:2367		Double sheared
homologous
IL_4WF9_087
IL_09705.15
IL_4V6Q_1561/BB/2401:2403,
1/BB/2414:2415		Single bulged U
geometric
IL_6UFH_004
IL_89505.4
IL_4V6Q_2091/BB/2454:2455,
1/BB/2496:2498		Major groove platform
homologous
IL_5J7L_392
IL_48076.6
IL_4V6Q_2281/BB/2457:2459,
1/BB/2493:2494		Major groove platform
homologous
IL_5J7L_393
IL_07039.3
IL_4V6Q_1581/BB/2459:2461,
1/BB/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
IL_51387.3
IL_4V6Q_1591/BB/2466:2470,
1/BB/2480:2484		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
IL_17948.2
IL_4V6Q_2101/BB/2507:2508,
1/BB/2580:2582		Major groove platform
homologous
IL_5J7L_394
IL_07039.3
IL_4V6Q_1611/BB/2510:2512,
1/BB/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_4V6Q_1621/BB/2512:2513,
1/BB/2571:2574		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_4V6Q_1631/BB/2521:2523,
1/BB/2540:2544		No text annotation
IL_4V6Q_2111/BB/2524:2526,
1/BB/2537:2539		Isolated near basepair
geometric
IL_4V88_406
NA
IL_4V6Q_1651/BB/2591:2592,
1/BB/2601:2603		Single bulged A
geometric
IL_7RQB_048
NA
IL_4V6Q_1661/BB/2636:2640,
1/BB/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_4V6Q_1671/BB/2652:2658,
1/BB/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.4
IL_4V6Q_1681/BB/2680:2684,
1/BB/2725:2727		C-loop
homologous
IL_7A0S_095
IL_63596.11
IL_4V6Q_1691/BB/2687:2691,
1/BB/2718:2722		UAA/GAN related, with intercalation
homologous
IL_4WF9_102
IL_23774.1
IL_4V6Q_1701/BB/2695:2696,
1/BB/2711:2714		Multiple bulged bases
homologous
IL_7RQB_106
NA
IL_4V6Q_1711/BB/2737:2742,
1/BB/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_4V6Q_1721/BB/2806:2811,
1/BB/2889:2892		No text annotation
homologous
IL_5J7L_351
IL_29471.1
IL_4V6Q_1741/BB/2838:2839,
1/BB/2878:2880		Single bulged C
homologous
IL_7RQB_108
NA
IL_4V6Q_1751/BB/2843:2846,
1/BB/2870:2874		No text annotation
homologous
IL_7RQB_109
NA
IL_4V6Q_1761/BB/2847:2852,
1/BB/2865:2869		No text annotation
homologous
IL_7A0S_101
IL_70411.2

Problematic loops

#loop idProblemSequence
IL_4V6Q_001Triple non-canonical cWW pairs
IL_4V6Q_177Tandem non-canonical cWW pairs
IL_4V6Q_002Isolated non-canonical cWW pair
IL_4V6Q_013No text annotation
IL_4V6Q_016No text annotation
IL_4V6Q_179No text annotation
IL_4V6Q_020No text annotation
IL_4V6Q_180No text annotation
IL_4V6Q_024No text annotation
IL_4V6Q_181Isolated non-canonical cWW pair
IL_4V6Q_039No text annotation
IL_4V6Q_040No text annotation
IL_4V6Q_044Other IL
IL_4V6Q_047No text annotation
IL_4V6Q_186No text annotation
IL_4V6Q_060No text annotation
IL_4V6Q_062No text annotation
IL_4V6Q_191No text annotation
IL_4V6Q_064No text annotation
IL_4V6Q_078No text annotation
IL_4V6Q_083Tandem non-canonical cWW pairs
IL_4V6Q_085Isolated near basepair
IL_4V6Q_194Tandem non-canonical cWW pairs
IL_4V6Q_092No text annotation
IL_4V6Q_099No text annotation
IL_4V6Q_195Isolated non-canonical cWW pair
IL_4V6Q_196No text annotation
IL_4V6Q_111No text annotation
IL_4V6Q_116No text annotation
IL_4V6Q_119No text annotation
IL_4V6Q_121No text annotation
IL_4V6Q_1245x5 Sarcin-Ricin with intercalated A; G-bulge
IL_4V6Q_198No text annotation
IL_4V6Q_125No text annotation
IL_4V6Q_200No text annotation
IL_4V6Q_134No text annotation
IL_4V6Q_142Isolated cWS basepair
IL_4V6Q_147No text annotation
IL_4V6Q_148No text annotation
IL_4V6Q_149No text annotation
IL_4V6Q_205No text annotation
IL_4V6Q_206No text annotation
IL_4V6Q_207No text annotation
IL_4V6Q_157No text annotation
IL_4V6Q_160No text annotation
IL_4V6Q_164No text annotation
IL_4V6Q_229Isolated non-canonical cWW pair
IL_4V6Q_212Tandem non-canonical cWW pairs
IL_4V6Q_230Isolated non-canonical cWW pair
IL_4V6Q_173Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V6Q_0271/AA/46:47,
1/AA/361:367,
1/AA/393:395		No text annotation
geometric
J3_4LFB_010
J3_67856.4
J3_4V6Q_0281/AA/46:52,
1/AA/359:367,
1/AA/393:395		No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_4V6Q_0021/AA/586:588,
1/AA/651:654,
1/AA/754:755		No text annotation
homologous
J3_5J7L_002
J3_56052.5
J3_4V6Q_0291/AA/586:588,
1/AA/651:655,
1/AA/751:755		No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_4V6Q_0031/AA/672:673,
1/AA/717:725,
1/AA/732:734		No text annotation
homologous
J3_4LFB_012
J3_11934.4
J3_4V6Q_0041/AA/826:829,
1/AA/857:861,
1/AA/868:874		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_4V6Q_0301/AA/936:939,
1/AA/1344:1350,
1/AA/1372:1379		No text annotation
homologous
J3_5J7L_052
J3_25303.4
J3_4V6Q_0051/AA/941:946,
1/AA/1235:1237,
1/AA/1337:1342		No text annotation
J3_4V6Q_0061/AA/955:962,
1/AA/973:984,
1/AA/1221:1225		No text annotation
homologous
J3_5J7L_006
J3_83516.4
J3_4V6Q_0071/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215		No text annotation
homologous
J3_5J7L_007
J3_82572.1
J3_4V6Q_0311/AA/990:997,
1/AA/1044:1047,
1/AA/1210:1215		No text annotation
homologous
J3_5J7L_053
J3_76475.2
J3_4V6Q_0081/AA/1003:1006,
1/AA/1023:1027,
1/AA/1034:1037		No text annotation
J3_4V6Q_0381/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_4V6Q_0101/AA/1073:1074,
1/AA/1083:1087,
1/AA/1098:1102		No text annotation
homologous
J3_6CZR_024
NA
J3_4V6Q_0321/AA/1116:1119,
1/AA/1154:1158,
1/AA/1181:1184		No text annotation
J3_4V6Q_0331/AA/1116:1119,
1/AA/1154:1161,
1/AA/1175:1184		No text annotation
J3_4V6Q_0391/AA/1237:1241,
1/AA/1296:1303,
1/AA/1334:1337		No text annotation
homologous
J3_5J7L_011
J3_37047.6
J3_4V6Q_0131/BA/10:16,
1/BA/68:70,
1/BA/106:110		No text annotation
homologous
J3_7A0S_014
NA
J3_4V6Q_0141/BB/30:31,
1/BB/474:481,
1/BB/509:510		No text annotation
homologous
J3_7A0S_001
J3_60031.2
J3_4V6Q_0341/BB/30:31,
1/BB/474:484,
1/BB/496:510		No text annotation
homologous
J3_5J7L_066
J3_92134.2
J3_4V6Q_0401/BB/32:34,
1/BB/446:461,
1/BB/468:473		No text annotation
J3_4V6Q_0151/BB/55:57,
1/BB/70:76,
1/BB/110:115		No text annotation
J3_4V6Q_0161/BB/683:689,
1/BB/773:775,
1/BB/791:794		No text annotation
homologous
J3_4WF9_002
J3_64189.2
J3_4V6Q_0171/BB/698:700,
1/BB/732:736,
1/BB/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_4V6Q_0361/BB/1055:1057,
1/BB/1081:1087,
1/BB/1102:1104		No text annotation
homologous
J3_9DFE_009
NA
J3_4V6Q_0191/BB/1298:1303,
1/BB/1625:1627,
1/BB/1639:1642		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_4V6Q_0201/BB/1306:1309,
1/BB/1605:1611,
1/BB/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_71677.1
J3_4V6Q_0211/BB/1344:1350,
1/BB/1381:1385,
1/BB/1402:1403		No text annotation
J3_4V6Q_0371/BB/1424:1430,
1/BB/1563:1565,
1/BB/1568:1574		No text annotation
J3_4V6Q_0221/BB/2091:2093,
1/BB/2196:2200,
1/BB/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
J3_89368.5
J3_4V6Q_0231/BB/2295:2299,
1/BB/2317:2323,
1/BB/2332:2337		No text annotation
homologous
J3_5J7L_071
J3_44961.1
J3_4V6Q_0411/BB/2517:2520,
1/BB/2545:2547,
1/BB/2561:2567		No text annotation
homologous
J3_4WF9_009
J3_32601.5
J3_4V6Q_0251/BB/2789:2791,
1/BB/2805:2806,
1/BB/2892:2894		No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_4V6Q_0261/BB/2812:2815,
1/BB/2831:2836,
1/BB/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J4_4V6Q_0161/AA/115:123,
1/AA/238:240,
1/AA/286:289,
1/AA/311:312		No text annotation
J4_4V6Q_0021/AA/142:144,
1/AA/178:184,
1/AA/193:198,
1/AA/219:221		No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_4V6Q_0031/AA/575:577,
1/AA/764:769,
1/AA/810:821,
1/AA/879:880		No text annotation
homologous
J4_6CZR_013
NA
J4_4V6Q_0171/AB/7:10,
1/AB/25:27,
1/AB/43:51,
1/AB/63:66		No text annotation
J4_4V6Q_0051/AD/7:10,
1/AD/26:28,
1/AD/44:50,
1/AD/66:67		tRNA junction
homologous
J4_7UZ0_001
J4_70449.29
J4_4V6Q_0061/BB/268:269,
1/BB/370:375,
1/BB/399:406,
1/BB/421:424		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_4V6Q_0071/BB/297:302,
1/BB/315:319,
1/BB/323:325,
1/BB/337:341		No text annotation
J4_4V6Q_0081/BB/601:604,
1/BB/624:628,
1/BB/635:638,
1/BB/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_4V6Q_0091/BB/1270:1276,
1/BB/1294:1295,
1/BB/1645:1648,
1/BB/2009:2010		No text annotation
homologous
J4_9DFE_003
J4_64571.5
J4_4V6Q_0181/BB/1310:1314,
1/BB/1338:1343,
1/BB/1404:1405,
1/BB/1597:1604		No text annotation
homologous
J4_4WF9_005
J4_69051.6
J4_4V6Q_0191/BB/1313:1314,
1/BB/1338:1343,
1/BB/1404:1405,
1/BB/1597:1603		No text annotation
homologous
J4_4WF9_006
J4_10313.5
J4_4V6Q_0121/BB/1444:1445,
1/BB/1466:1467,
1/BB/1525:1526,
1/BB/1546:1547		No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_4V6Q_0201/BB/1772:1776,
1/BB/1788:1792,
1/BB/1827:1830,
1/BB/1975:1979		No text annotation
homologous
J4_7A0S_008
J4_61477.5
J4_4V6Q_0141/BB/1833:1835,
1/BB/1905:1906,
1/BB/1924:1933,
1/BB/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_4V6Q_0151/BB/2643:2646,
1/BB/2674:2676,
1/BB/2731:2735,
1/BB/2769:2771		No text annotation
homologous
J4_9DFE_010
J4_77044.4
J5_4V6Q_0011/AA/36:39,
1/AA/403:406,
1/AA/436:440,
1/AA/497:500,
1/AA/545:548		No text annotation
J5_4V6Q_0021/AA/36:39,
1/AA/403:406,
1/AA/436:442,
1/AA/492:500,
1/AA/545:548		No text annotation
J5_4V6Q_0031/AA/58:61,
1/AA/106:113,
1/AA/314:316,
1/AA/337:339,
1/AA/350:354		No text annotation
homologous
J5_5J7L_003
J5_59910.6
J5_4V6Q_0041/BB/47:54,
1/BB/116:121,
1/BB/130:131,
1/BB/148:150,
1/BB/176:178		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_4V6Q_0051/BB/531:533,
1/BB/560:564,
1/BB/577:579,
1/BB/1261:1262,
1/BB/2017:2018		No text annotation
homologous
J5_9DFE_003
J5_43153.5
J5_4V6Q_0061/BB/584:589,
1/BB/668:671,
1/BB/809:812,
1/BB/1195:1196,
1/BB/1250:1256		No text annotation
homologous
J5_9DFE_004
J5_74302.5
J5_4V6Q_0071/BB/1674:1682,
1/BB/1706:1707,
1/BB/1751:1752,
1/BB/1756:1764,
1/BB/1988:1990		No text annotation
homologous
J5_4WF9_005
J5_62523.6
J5_4V6Q_0081/BB/2057:2064,
1/BB/2446:2454,
1/BB/2498:2506,
1/BB/2583:2588,
1/BB/2606:2611		No text annotation
J5_4V6Q_0091/BB/2074:2077,
1/BB/2243:2246,
1/BB/2258:2259,
1/BB/2281:2282,
1/BB/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J5_4V6Q_0111/BB/2282:2289,
1/BB/2343:2347,
1/BB/2370:2373,
1/BB/2380:2395,
1/BB/2421:2427		No text annotation
J6_4V6Q_0021/BB/45:46,
1/BB/179:184,
1/BB/212:224,
1/BB/231:235,
1/BB/262:266,
1/BB/426:433		No text annotation
J7_4V6Q_0011/BB/8:15,
1/BB/525:531,
1/BB/2018:2023,
1/BB/2040:2043,
1/BB/2625:2630,
1/BB/2788:2789,
1/BB/2894:2895		No text annotation
J7_4V6Q_0021/BB/817:822,
1/BB/835:838,
1/BB/940:946,
1/BB/971:976,
1/BB/987:991,
1/BB/1163:1164,
1/BB/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_4V6Q_001No text annotation
J3_4V6Q_009No text annotation
J3_4V6Q_011No text annotation
J3_4V6Q_012No text annotation
J3_4V6Q_035No text annotation
J3_4V6Q_018No text annotation
J3_4V6Q_024No text annotation
J4_4V6Q_001No text annotation
J4_4V6Q_004No text annotation
J4_4V6Q_010No text annotation
J4_4V6Q_011No text annotation
J4_4V6Q_013No text annotation
J5_4V6Q_010No text annotation
J6_4V6Q_001No text annotation

Coloring options:
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