4V6Q Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V6Q_001 | No text annotation | ||
HL_4V6Q_110 | No text annotation | ||
HL_4V6Q_002 | No text annotation | ||
HL_4V6Q_003 | GNRA | ||
HL_4V6Q_004 | GNRA | ||
HL_4V6Q_005 | UNCG | ||
HL_4V6Q_006 | GNRA related | ||
HL_4V6Q_007 | GNRA | ||
HL_4V6Q_008 | No text annotation | ||
HL_4V6Q_009 | UNCG | ||
HL_4V6Q_111 | No text annotation | ||
HL_4V6Q_010 | No text annotation | ||
HL_4V6Q_011 | UNCG | ||
HL_4V6Q_012 | No text annotation | ||
HL_4V6Q_013 | No text annotation | ||
HL_4V6Q_112 | GNRA variation | ||
HL_4V6Q_014 | GNRA-like with tWH | ||
HL_4V6Q_015 | No text annotation | ||
HL_4V6Q_016 | No text annotation | ||
HL_4V6Q_017 | No text annotation | ||
HL_4V6Q_113 | No text annotation | ||
HL_4V6Q_018 | No text annotation | ||
HL_4V6Q_019 | GNRA | ||
HL_4V6Q_020 | GNRA | ||
HL_4V6Q_021 | No text annotation | ||
HL_4V6Q_022 | GNRA | ||
HL_4V6Q_023 | UNCG | ||
HL_4V6Q_024 | No text annotation | ||
HL_4V6Q_114 | tRNA anticodon loop | ||
HL_4V6Q_124 | GNRA | ||
HL_4V6Q_025 | T-loop related | ||
HL_4V6Q_026 | No text annotation | ||
HL_4V6Q_027 | GNRA | ||
HL_4V6Q_028 | GNRA | ||
HL_4V6Q_029 | T-loop with 3 stacked bulged bases | ||
HL_4V6Q_030 | No text annotation | ||
HL_4V6Q_031 | UNCG | ||
HL_4V6Q_032 | GNRA | ||
HL_4V6Q_033 | tRNA D-loop | ||
HL_4V6Q_034 | No text annotation | ||
HL_4V6Q_125 | tRNA anticodon loop | ||
HL_4V6Q_035 | No text annotation | ||
HL_4V6Q_126 | No text annotation | ||
HL_4V6Q_036 | No text annotation | ||
HL_4V6Q_037 | tRNA anticodon loop | ||
HL_4V6Q_038 | T-loop with 2 stacked bulged bases | ||
HL_4V6Q_039 | No text annotation | ||
HL_4V6Q_040 | Mini UNCG | ||
HL_4V6Q_041 | Pseudoknot with intercalation | ||
HL_4V6Q_042 | No text annotation | ||
HL_4V6Q_115 | No text annotation | ||
HL_4V6Q_043 | No text annotation | ||
HL_4V6Q_044 | UNCG | ||
HL_4V6Q_045 | No text annotation | ||
HL_4V6Q_116 | No text annotation | ||
HL_4V6Q_046 | No text annotation | ||
HL_4V6Q_047 | No text annotation | ||
HL_4V6Q_048 | No text annotation | ||
HL_4V6Q_049 | T-loop with 2 stacked bulged bases | ||
HL_4V6Q_050 | No text annotation | ||
HL_4V6Q_051 | T-loop with unstacked turn | ||
HL_4V6Q_052 | No text annotation | ||
HL_4V6Q_127 | No text annotation | ||
HL_4V6Q_053 | No text annotation | ||
HL_4V6Q_117 | No text annotation | ||
HL_4V6Q_054 | GNRA | ||
HL_4V6Q_055 | GNRA | ||
HL_4V6Q_056 | No text annotation | ||
HL_4V6Q_118 | No text annotation | ||
HL_4V6Q_057 | No text annotation | ||
HL_4V6Q_058 | No text annotation | ||
HL_4V6Q_059 | GNRA | ||
HL_4V6Q_060 | Anticodon loop related | ||
HL_4V6Q_128 | GNRA | ||
HL_4V6Q_119 | No text annotation | ||
HL_4V6Q_061 | No text annotation | ||
HL_4V6Q_062 | No text annotation | ||
HL_4V6Q_063 | UNCG variation | ||
HL_4V6Q_064 | No text annotation | ||
HL_4V6Q_065 | No text annotation | ||
HL_4V6Q_066 | No text annotation | ||
HL_4V6Q_120 | GNRA | ||
HL_4V6Q_067 | No text annotation | ||
HL_4V6Q_068 | No text annotation | ||
HL_4V6Q_069 | GNRA wlth tandem sheared | ||
HL_4V6Q_070 | Externally structured | ||
HL_4V6Q_071 | GNRA | ||
HL_4V6Q_072 | T-loop with 2 stacked bulged bases | ||
HL_4V6Q_073 | Pseudoknot geometry with 3' bulge | ||
HL_4V6Q_074 | GNRA | ||
HL_4V6Q_075 | No text annotation | ||
HL_4V6Q_076 | No text annotation | ||
HL_4V6Q_077 | Pseudoknot geometry with 3' bulge | ||
HL_4V6Q_078 | UNCG | ||
HL_4V6Q_079 | No text annotation | ||
HL_4V6Q_080 | No text annotation | ||
HL_4V6Q_081 | GNRA with extra cWW | ||
HL_4V6Q_121 | GNRA | ||
HL_4V6Q_082 | No text annotation | ||
HL_4V6Q_083 | Mini UNCG related | ||
HL_4V6Q_084 | No text annotation | ||
HL_4V6Q_085 | No text annotation | ||
HL_4V6Q_086 | No text annotation | ||
HL_4V6Q_087 | GNRA | ||
HL_4V6Q_088 | No text annotation | ||
HL_4V6Q_089 | No text annotation | ||
HL_4V6Q_090 | No text annotation | ||
HL_4V6Q_091 | No text annotation | ||
HL_4V6Q_092 | No text annotation | ||
HL_4V6Q_093 | No text annotation | ||
HL_4V6Q_094 | No text annotation | ||
HL_4V6Q_095 | No text annotation | ||
HL_4V6Q_129 | No text annotation | ||
HL_4V6Q_122 | tRNA anticodon loop | ||
HL_4V6Q_096 | Pseudoknot geometry | ||
HL_4V6Q_097 | GNRA | ||
HL_4V6Q_098 | GNRA | ||
HL_4V6Q_099 | No text annotation | ||
HL_4V6Q_100 | UNCG variation | ||
HL_4V6Q_101 | No text annotation | ||
HL_4V6Q_102 | No text annotation | ||
HL_4V6Q_103 | GNRA | ||
HL_4V6Q_104 | GNRA | ||
HL_4V6Q_123 | No text annotation | ||
HL_4V6Q_105 | Ribsomal LSU H95 | ||
HL_4V6Q_106 | No text annotation | ||
HL_4V6Q_107 | No text annotation | ||
HL_4V6Q_108 | No text annotation | ||
HL_4V6Q_109 | GNRA |
Valid loops
No loops found
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4V6Q_001 | Triple non-canonical cWW pairs | ||
IL_4V6Q_177 | Tandem non-canonical cWW pairs | ||
IL_4V6Q_213 | Isolated non-canonical cWW pair | ||
IL_4V6Q_002 | Isolated non-canonical cWW pair | ||
IL_4V6Q_214 | Single bulged A | ||
IL_4V6Q_003 | No text annotation | ||
IL_4V6Q_004 | Minor groove platform | ||
IL_4V6Q_005 | Multiple bulged bases | ||
IL_4V6Q_006 | Minor groove platform with extra cWW | ||
IL_4V6Q_007 | Minor groove platform | ||
IL_4V6Q_008 | Single bulged G, near cWW | ||
IL_4V6Q_009 | Isolated non-canonical cWW pair | ||
IL_4V6Q_010 | No text annotation | ||
IL_4V6Q_011 | No text annotation | ||
IL_4V6Q_012 | Isolated cWH basepair | ||
IL_4V6Q_013 | No text annotation | ||
IL_4V6Q_178 | tWH-tWH-tHW-tHW | ||
IL_4V6Q_014 | No text annotation | ||
IL_4V6Q_015 | Kink-turn with non-sequential stacking | ||
IL_4V6Q_215 | No text annotation | ||
IL_4V6Q_016 | No text annotation | ||
IL_4V6Q_179 | No text annotation | ||
IL_4V6Q_017 | No text annotation | ||
IL_4V6Q_018 | Single bulged U | ||
IL_4V6Q_019 | C-loop with extra cWW pair | ||
IL_4V6Q_020 | No text annotation | ||
IL_4V6Q_216 | No text annotation | ||
IL_4V6Q_180 | No text annotation | ||
IL_4V6Q_021 | No text annotation | ||
IL_4V6Q_022 | tSH-tHW-tWW | ||
IL_4V6Q_023 | No text annotation | ||
IL_4V6Q_024 | No text annotation | ||
IL_4V6Q_217 | No text annotation | ||
IL_4V6Q_025 | Single stack bend | ||
IL_4V6Q_026 | SSU/LSU pseudoknot | ||
IL_4V6Q_027 | Kink-turn related | ||
IL_4V6Q_028 | No text annotation | ||
IL_4V6Q_029 | tSH-tHW-tHS | ||
IL_4V6Q_030 | Major groove platform | ||
IL_4V6Q_031 | Major groove minor groove platform; mini C-loop | ||
IL_4V6Q_032 | No text annotation | ||
IL_4V6Q_033 | Major groove platform; stack outside cWW | ||
IL_4V6Q_034 | Single stack bend | ||
IL_4V6Q_035 | Tandem non-canonical cWW pairs | ||
IL_4V6Q_036 | No text annotation | ||
IL_4V6Q_037 | Kink-turn | ||
IL_4V6Q_181 | Isolated non-canonical cWW pair | ||
IL_4V6Q_038 | Left turn | ||
IL_4V6Q_039 | No text annotation | ||
IL_4V6Q_182 | tSH-tHW-tHS | ||
IL_4V6Q_040 | No text annotation | ||
IL_4V6Q_041 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
IL_4V6Q_042 | Single bulged G | ||
IL_4V6Q_043 | Minor groove platform | ||
IL_4V6Q_183 | No text annotation | ||
IL_4V6Q_044 | Other IL | ||
IL_4V6Q_045 | Minor groove platform | ||
IL_4V6Q_046 | Single stack bend | ||
IL_4V6Q_184 | No text annotation | ||
IL_4V6Q_047 | No text annotation | ||
IL_4V6Q_185 | Isolated cWS basepair | ||
IL_4V6Q_048 | Minor groove platform | ||
IL_4V6Q_049 | Single bulged A | ||
IL_4V6Q_050 | Isolated non-canonical cWW pair | ||
IL_4V6Q_051 | No text annotation | ||
IL_4V6Q_052 | Minor groove platform | ||
IL_4V6Q_053 | No text annotation | ||
IL_4V6Q_186 | No text annotation | ||
IL_4V6Q_054 | No text annotation | ||
IL_4V6Q_055 | No text annotation | ||
IL_4V6Q_056 | Double sheared with non-canonical cWW | ||
IL_4V6Q_057 | No text annotation | ||
IL_4V6Q_058 | No text annotation | ||
IL_4V6Q_187 | No text annotation | ||
IL_4V6Q_059 | No text annotation | ||
IL_4V6Q_188 | Isolated non-canonical cWW pair | ||
IL_4V6Q_060 | No text annotation | ||
IL_4V6Q_189 | Decoding loop related | ||
IL_4V6Q_061 | No text annotation | ||
IL_4V6Q_190 | No text annotation | ||
IL_4V6Q_062 | No text annotation | ||
IL_4V6Q_191 | No text annotation | ||
IL_4V6Q_063 | Triple sheared related | ||
IL_4V6Q_064 | No text annotation | ||
IL_4V6Q_218 | No text annotation | ||
IL_4V6Q_065 | No text annotation | ||
IL_4V6Q_066 | Major groove intercalation | ||
IL_4V6Q_067 | No text annotation | ||
IL_4V6Q_068 | Minor groove platform | ||
IL_4V6Q_069 | Bacterial 5S Loop E | ||
IL_4V6Q_192 | No text annotation | ||
IL_4V6Q_070 | Triple sheared with non-canonical cWW | ||
IL_4V6Q_071 | Single bulged A | ||
IL_4V6Q_072 | Minor groove platform | ||
IL_4V6Q_073 | No text annotation | ||
IL_4V6Q_074 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4V6Q_075 | 7x6 Sarcin-Ricin; G-bulge | ||
IL_4V6Q_076 | No text annotation | ||
IL_4V6Q_077 | No text annotation | ||
IL_4V6Q_078 | No text annotation | ||
IL_4V6Q_193 | No text annotation | ||
IL_4V6Q_079 | No text annotation | ||
IL_4V6Q_080 | Double sheared | ||
IL_4V6Q_081 | No text annotation | ||
IL_4V6Q_082 | AAA cross-strand stack | ||
IL_4V6Q_083 | Tandem non-canonical cWW pairs | ||
IL_4V6Q_219 | Isolated non-canonical cWW pair | ||
IL_4V6Q_084 | tHW-tHW cross-strand stack | ||
IL_4V6Q_085 | Isolated near basepair | ||
IL_4V6Q_194 | Tandem non-canonical cWW pairs | ||
IL_4V6Q_086 | Single bulged A | ||
IL_4V6Q_087 | Quadruple sheared | ||
IL_4V6Q_088 | Major groove platform | ||
IL_4V6Q_089 | Multiple bulged bases | ||
IL_4V6Q_090 | Single stack bend | ||
IL_4V6Q_091 | No text annotation | ||
IL_4V6Q_092 | No text annotation | ||
IL_4V6Q_220 | Single stack bend | ||
IL_4V6Q_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
IL_4V6Q_094 | Minor groove platform | ||
IL_4V6Q_095 | C-loop with bulged stacked A's | ||
IL_4V6Q_096 | Isolated non-canonical cWW pair | ||
IL_4V6Q_097 | Double sheared with non-canonical cWW | ||
IL_4V6Q_098 | Major groove intercalation | ||
IL_4V6Q_099 | No text annotation | ||
IL_4V6Q_100 | Single bulged C | ||
IL_4V6Q_101 | UAA/GAN | ||
IL_4V6Q_195 | Isolated non-canonical cWW pair | ||
IL_4V6Q_102 | Multiple bulged bases | ||
IL_4V6Q_103 | Single bulged U | ||
IL_4V6Q_104 | Kink-turn related | ||
IL_4V6Q_105 | No text annotation | ||
IL_4V6Q_106 | Isolated non-canonical cWW pair | ||
IL_4V6Q_107 | Tandem non-canonical cWW pairs | ||
IL_4V6Q_108 | Kink-turn | ||
IL_4V6Q_109 | No text annotation | ||
IL_4V6Q_110 | Major groove platform | ||
IL_4V6Q_196 | No text annotation | ||
IL_4V6Q_221 | No text annotation | ||
IL_4V6Q_111 | No text annotation | ||
IL_4V6Q_112 | No text annotation | ||
IL_4V6Q_113 | Kink-turn | ||
IL_4V6Q_114 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4V6Q_115 | Major groove platform; stack outside cWW | ||
IL_4V6Q_222 | C-loop | ||
IL_4V6Q_116 | No text annotation | ||
IL_4V6Q_117 | UAA/GAN | ||
IL_4V6Q_118 | tSH-tHW-tHS | ||
IL_4V6Q_119 | No text annotation | ||
IL_4V6Q_223 | No text annotation | ||
IL_4V6Q_120 | UAA/GAN | ||
IL_4V6Q_121 | No text annotation | ||
IL_4V6Q_224 | Tandem non-canonical cWW pairs | ||
IL_4V6Q_122 | tSH-tHW | ||
IL_4V6Q_123 | No text annotation | ||
IL_4V6Q_124 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
IL_4V6Q_197 | tSH-tHW-tHS | ||
IL_4V6Q_225 | No text annotation | ||
IL_4V6Q_198 | No text annotation | ||
IL_4V6Q_125 | No text annotation | ||
IL_4V6Q_126 | Single bulged A | ||
IL_4V6Q_127 | UAA/GAN variation | ||
IL_4V6Q_128 | No text annotation | ||
IL_4V6Q_129 | Isolated tWW turn | ||
IL_4V6Q_130 | Major groove platform; stack outside cWW | ||
IL_4V6Q_199 | No text annotation | ||
IL_4V6Q_131 | Intercalated tWH | ||
IL_4V6Q_132 | tSH-tSH-tHH-tHS | ||
IL_4V6Q_133 | 6x5 Sarcin-Ricin; G-bulge | ||
IL_4V6Q_200 | No text annotation | ||
IL_4V6Q_226 | Triple sheared with non-canonical cWW | ||
IL_4V6Q_134 | No text annotation | ||
IL_4V6Q_135 | Single bulged C | ||
IL_4V6Q_136 | Single bulged A | ||
IL_4V6Q_137 | Kink-turn related | ||
IL_4V6Q_138 | Minor groove platform, major groove intercalation | ||
IL_4V6Q_201 | No text annotation | ||
IL_4V6Q_139 | Isolated non-canonical cWW pair | ||
IL_4V6Q_140 | No text annotation | ||
IL_4V6Q_141 | No text annotation | ||
IL_4V6Q_142 | Isolated cWS basepair | ||
IL_4V6Q_143 | UAA/GAN related | ||
IL_4V6Q_144 | Major groove intercalation | ||
IL_4V6Q_145 | No text annotation | ||
IL_4V6Q_146 | Major groove platform | ||
IL_4V6Q_147 | No text annotation | ||
IL_4V6Q_202 | No text annotation | ||
IL_4V6Q_148 | No text annotation | ||
IL_4V6Q_203 | Single bulged U | ||
IL_4V6Q_149 | No text annotation | ||
IL_4V6Q_204 | No text annotation | ||
IL_4V6Q_150 | Isolated tHS basepair with bulges | ||
IL_4V6Q_205 | No text annotation | ||
IL_4V6Q_151 | Tandem non-canonical cWW pairs | ||
IL_4V6Q_152 | Isolated near basepair | ||
IL_4V6Q_153 | No text annotation | ||
IL_4V6Q_227 | No text annotation | ||
IL_4V6Q_206 | No text annotation | ||
IL_4V6Q_207 | No text annotation | ||
IL_4V6Q_208 | No text annotation | ||
IL_4V6Q_154 | Single bulged U | ||
IL_4V6Q_155 | Double sheared | ||
IL_4V6Q_156 | Single bulged U | ||
IL_4V6Q_209 | Major groove platform | ||
IL_4V6Q_157 | No text annotation | ||
IL_4V6Q_228 | Major groove platform | ||
IL_4V6Q_158 | Major groove minor groove platform with extra cWW | ||
IL_4V6Q_159 | Double sheared with non-canonical cWW | ||
IL_4V6Q_210 | Major groove platform | ||
IL_4V6Q_160 | No text annotation | ||
IL_4V6Q_161 | Isolated non-canonical cWW with bulges | ||
IL_4V6Q_162 | No text annotation | ||
IL_4V6Q_163 | No text annotation | ||
IL_4V6Q_211 | Isolated near basepair | ||
IL_4V6Q_164 | No text annotation | ||
IL_4V6Q_165 | Single bulged A | ||
IL_4V6Q_166 | tSH-tHS-tHW | ||
IL_4V6Q_167 | Sarcin-Ricin target in LSU H95; G-bulge | ||
IL_4V6Q_229 | Isolated non-canonical cWW pair | ||
IL_4V6Q_212 | Tandem non-canonical cWW pairs | ||
IL_4V6Q_168 | C-loop | ||
IL_4V6Q_169 | UAA/GAN related, with intercalation | ||
IL_4V6Q_170 | Multiple bulged bases | ||
IL_4V6Q_171 | UAA/GAN with extra cWW | ||
IL_4V6Q_172 | No text annotation | ||
IL_4V6Q_230 | Isolated non-canonical cWW pair | ||
IL_4V6Q_173 | Tandem non-canonical cWW pairs | ||
IL_4V6Q_174 | Single bulged C | ||
IL_4V6Q_175 | No text annotation | ||
IL_4V6Q_176 | No text annotation |
Valid loops
No loops found
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_4V6Q_001 | No text annotation | ||
J3_4V6Q_027 | No text annotation | ||
J3_4V6Q_028 | No text annotation | ||
J3_4V6Q_002 | No text annotation | ||
J3_4V6Q_029 | No text annotation | ||
J3_4V6Q_003 | No text annotation | ||
J3_4V6Q_004 | No text annotation | ||
J3_4V6Q_030 | No text annotation | ||
J3_4V6Q_005 | No text annotation | ||
J3_4V6Q_006 | No text annotation | ||
J3_4V6Q_007 | No text annotation | ||
J3_4V6Q_031 | No text annotation | ||
J3_4V6Q_008 | No text annotation | ||
J3_4V6Q_038 | No text annotation | ||
J3_4V6Q_009 | No text annotation | ||
J3_4V6Q_010 | No text annotation | ||
J3_4V6Q_032 | No text annotation | ||
J3_4V6Q_011 | No text annotation | ||
J3_4V6Q_033 | No text annotation | ||
J3_4V6Q_039 | No text annotation | ||
J3_4V6Q_012 | No text annotation | ||
J3_4V6Q_013 | No text annotation | ||
J3_4V6Q_014 | No text annotation | ||
J3_4V6Q_034 | No text annotation | ||
J3_4V6Q_040 | No text annotation | ||
J3_4V6Q_035 | No text annotation | ||
J3_4V6Q_015 | No text annotation | ||
J3_4V6Q_016 | No text annotation | ||
J3_4V6Q_017 | No text annotation | ||
J3_4V6Q_036 | No text annotation | ||
J3_4V6Q_018 | No text annotation | ||
J3_4V6Q_019 | No text annotation | ||
J3_4V6Q_020 | No text annotation | ||
J3_4V6Q_021 | No text annotation | ||
J3_4V6Q_037 | No text annotation | ||
J3_4V6Q_022 | Kink-turn 3-way junction | ||
J3_4V6Q_023 | No text annotation | ||
J3_4V6Q_041 | No text annotation | ||
J3_4V6Q_024 | No text annotation | ||
J3_4V6Q_025 | No text annotation | ||
J3_4V6Q_026 | No text annotation | ||
J4_4V6Q_016 | No text annotation | ||
J4_4V6Q_001 | No text annotation | ||
J4_4V6Q_002 | No text annotation | ||
J4_4V6Q_003 | No text annotation | ||
J4_4V6Q_017 | No text annotation | ||
J4_4V6Q_004 | No text annotation | ||
J4_4V6Q_005 | tRNA junction | ||
J4_4V6Q_006 | No text annotation | ||
J4_4V6Q_007 | No text annotation | ||
J4_4V6Q_008 | No text annotation | ||
J4_4V6Q_009 | No text annotation | ||
J4_4V6Q_018 | No text annotation | ||
J4_4V6Q_010 | No text annotation | ||
J4_4V6Q_019 | No text annotation | ||
J4_4V6Q_011 | No text annotation | ||
J4_4V6Q_012 | No text annotation | ||
J4_4V6Q_020 | No text annotation | ||
J4_4V6Q_013 | No text annotation | ||
J4_4V6Q_014 | No text annotation | ||
J4_4V6Q_015 | No text annotation | ||
J5_4V6Q_001 | No text annotation | ||
J5_4V6Q_002 | No text annotation | ||
J5_4V6Q_003 | No text annotation | ||
J5_4V6Q_004 | No text annotation | ||
J5_4V6Q_005 | No text annotation | ||
J5_4V6Q_006 | No text annotation | ||
J5_4V6Q_007 | No text annotation | ||
J5_4V6Q_008 | No text annotation | ||
J5_4V6Q_009 | No text annotation | ||
J5_4V6Q_011 | No text annotation | ||
J5_4V6Q_010 | No text annotation | ||
J6_4V6Q_002 | No text annotation | ||
J6_4V6Q_001 | No text annotation | ||
J7_4V6Q_001 | No text annotation | ||
J7_4V6Q_002 | No text annotation |
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