Valid loops

No loops found

Problematic loops

#loop idProblemSequence
HL_4V6Q_001No text annotation
HL_4V6Q_110No text annotation
HL_4V6Q_002No text annotation
HL_4V6Q_003GNRA
HL_4V6Q_004GNRA
HL_4V6Q_005UNCG
HL_4V6Q_006GNRA related
HL_4V6Q_007GNRA
HL_4V6Q_008No text annotation
HL_4V6Q_009UNCG
HL_4V6Q_111No text annotation
HL_4V6Q_010No text annotation
HL_4V6Q_011UNCG
HL_4V6Q_012No text annotation
HL_4V6Q_013No text annotation
HL_4V6Q_112GNRA variation
HL_4V6Q_014GNRA-like with tWH
HL_4V6Q_015No text annotation
HL_4V6Q_016No text annotation
HL_4V6Q_017No text annotation
HL_4V6Q_113No text annotation
HL_4V6Q_018No text annotation
HL_4V6Q_019GNRA
HL_4V6Q_020GNRA
HL_4V6Q_021No text annotation
HL_4V6Q_022GNRA
HL_4V6Q_023UNCG
HL_4V6Q_024No text annotation
HL_4V6Q_114tRNA anticodon loop
HL_4V6Q_124GNRA
HL_4V6Q_025T-loop related
HL_4V6Q_026No text annotation
HL_4V6Q_027GNRA
HL_4V6Q_028GNRA
HL_4V6Q_029T-loop with 3 stacked bulged bases
HL_4V6Q_030No text annotation
HL_4V6Q_031UNCG
HL_4V6Q_032GNRA
HL_4V6Q_033tRNA D-loop
HL_4V6Q_034No text annotation
HL_4V6Q_125tRNA anticodon loop
HL_4V6Q_035No text annotation
HL_4V6Q_126No text annotation
HL_4V6Q_036No text annotation
HL_4V6Q_037tRNA anticodon loop
HL_4V6Q_038T-loop with 2 stacked bulged bases
HL_4V6Q_039No text annotation
HL_4V6Q_040Mini UNCG
HL_4V6Q_041Pseudoknot with intercalation
HL_4V6Q_042No text annotation
HL_4V6Q_115No text annotation
HL_4V6Q_043No text annotation
HL_4V6Q_044UNCG
HL_4V6Q_045No text annotation
HL_4V6Q_116No text annotation
HL_4V6Q_046No text annotation
HL_4V6Q_047No text annotation
HL_4V6Q_048No text annotation
HL_4V6Q_049T-loop with 2 stacked bulged bases
HL_4V6Q_050No text annotation
HL_4V6Q_051T-loop with unstacked turn
HL_4V6Q_052No text annotation
HL_4V6Q_127No text annotation
HL_4V6Q_053No text annotation
HL_4V6Q_117No text annotation
HL_4V6Q_054GNRA
HL_4V6Q_055GNRA
HL_4V6Q_056No text annotation
HL_4V6Q_118No text annotation
HL_4V6Q_057No text annotation
HL_4V6Q_058No text annotation
HL_4V6Q_059GNRA
HL_4V6Q_060Anticodon loop related
HL_4V6Q_128GNRA
HL_4V6Q_119No text annotation
HL_4V6Q_061No text annotation
HL_4V6Q_062No text annotation
HL_4V6Q_063UNCG variation
HL_4V6Q_064No text annotation
HL_4V6Q_065No text annotation
HL_4V6Q_066No text annotation
HL_4V6Q_120GNRA
HL_4V6Q_067No text annotation
HL_4V6Q_068No text annotation
HL_4V6Q_069GNRA wlth tandem sheared
HL_4V6Q_070Externally structured
HL_4V6Q_071GNRA
HL_4V6Q_072T-loop with 2 stacked bulged bases
HL_4V6Q_073Pseudoknot geometry with 3' bulge
HL_4V6Q_074GNRA
HL_4V6Q_075No text annotation
HL_4V6Q_076No text annotation
HL_4V6Q_077Pseudoknot geometry with 3' bulge
HL_4V6Q_078UNCG
HL_4V6Q_079No text annotation
HL_4V6Q_080No text annotation
HL_4V6Q_081GNRA with extra cWW
HL_4V6Q_121GNRA
HL_4V6Q_082No text annotation
HL_4V6Q_083Mini UNCG related
HL_4V6Q_084No text annotation
HL_4V6Q_085No text annotation
HL_4V6Q_086No text annotation
HL_4V6Q_087GNRA
HL_4V6Q_088No text annotation
HL_4V6Q_089No text annotation
HL_4V6Q_090No text annotation
HL_4V6Q_091No text annotation
HL_4V6Q_092No text annotation
HL_4V6Q_093No text annotation
HL_4V6Q_094No text annotation
HL_4V6Q_095No text annotation
HL_4V6Q_129No text annotation
HL_4V6Q_122tRNA anticodon loop
HL_4V6Q_096Pseudoknot geometry
HL_4V6Q_097GNRA
HL_4V6Q_098GNRA
HL_4V6Q_099No text annotation
HL_4V6Q_100UNCG variation
HL_4V6Q_101No text annotation
HL_4V6Q_102No text annotation
HL_4V6Q_103GNRA
HL_4V6Q_104GNRA
HL_4V6Q_123No text annotation
HL_4V6Q_105Ribsomal LSU H95
HL_4V6Q_106No text annotation
HL_4V6Q_107No text annotation
HL_4V6Q_108No text annotation
HL_4V6Q_109GNRA

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
IL_4V6Q_001Triple non-canonical cWW pairs
IL_4V6Q_177Tandem non-canonical cWW pairs
IL_4V6Q_213Isolated non-canonical cWW pair
IL_4V6Q_002Isolated non-canonical cWW pair
IL_4V6Q_214Single bulged A
IL_4V6Q_003No text annotation
IL_4V6Q_004Minor groove platform
IL_4V6Q_005Multiple bulged bases
IL_4V6Q_006Minor groove platform with extra cWW
IL_4V6Q_007Minor groove platform
IL_4V6Q_008Single bulged G, near cWW
IL_4V6Q_009Isolated non-canonical cWW pair
IL_4V6Q_010No text annotation
IL_4V6Q_011No text annotation
IL_4V6Q_012Isolated cWH basepair
IL_4V6Q_013No text annotation
IL_4V6Q_178tWH-tWH-tHW-tHW
IL_4V6Q_014No text annotation
IL_4V6Q_015Kink-turn with non-sequential stacking
IL_4V6Q_215No text annotation
IL_4V6Q_016No text annotation
IL_4V6Q_179No text annotation
IL_4V6Q_017No text annotation
IL_4V6Q_018Single bulged U
IL_4V6Q_019C-loop with extra cWW pair
IL_4V6Q_020No text annotation
IL_4V6Q_216No text annotation
IL_4V6Q_180No text annotation
IL_4V6Q_021No text annotation
IL_4V6Q_022tSH-tHW-tWW
IL_4V6Q_023No text annotation
IL_4V6Q_024No text annotation
IL_4V6Q_217No text annotation
IL_4V6Q_025Single stack bend
IL_4V6Q_026SSU/LSU pseudoknot
IL_4V6Q_027Kink-turn related
IL_4V6Q_028No text annotation
IL_4V6Q_029tSH-tHW-tHS
IL_4V6Q_030Major groove platform
IL_4V6Q_031Major groove minor groove platform; mini C-loop
IL_4V6Q_032No text annotation
IL_4V6Q_033Major groove platform; stack outside cWW
IL_4V6Q_034Single stack bend
IL_4V6Q_035Tandem non-canonical cWW pairs
IL_4V6Q_036No text annotation
IL_4V6Q_037Kink-turn
IL_4V6Q_181Isolated non-canonical cWW pair
IL_4V6Q_038Left turn
IL_4V6Q_039No text annotation
IL_4V6Q_182tSH-tHW-tHS
IL_4V6Q_040No text annotation
IL_4V6Q_0418x6 Sarcin-Ricin with inserted Y; G-bulge
IL_4V6Q_042Single bulged G
IL_4V6Q_043Minor groove platform
IL_4V6Q_183No text annotation
IL_4V6Q_044Other IL
IL_4V6Q_045Minor groove platform
IL_4V6Q_046Single stack bend
IL_4V6Q_184No text annotation
IL_4V6Q_047No text annotation
IL_4V6Q_185Isolated cWS basepair
IL_4V6Q_048Minor groove platform
IL_4V6Q_049Single bulged A
IL_4V6Q_050Isolated non-canonical cWW pair
IL_4V6Q_051No text annotation
IL_4V6Q_052Minor groove platform
IL_4V6Q_053No text annotation
IL_4V6Q_186No text annotation
IL_4V6Q_054No text annotation
IL_4V6Q_055No text annotation
IL_4V6Q_056Double sheared with non-canonical cWW
IL_4V6Q_057No text annotation
IL_4V6Q_058No text annotation
IL_4V6Q_187No text annotation
IL_4V6Q_059No text annotation
IL_4V6Q_188Isolated non-canonical cWW pair
IL_4V6Q_060No text annotation
IL_4V6Q_189Decoding loop related
IL_4V6Q_061No text annotation
IL_4V6Q_190No text annotation
IL_4V6Q_062No text annotation
IL_4V6Q_191No text annotation
IL_4V6Q_063Triple sheared related
IL_4V6Q_064No text annotation
IL_4V6Q_218No text annotation
IL_4V6Q_065No text annotation
IL_4V6Q_066Major groove intercalation
IL_4V6Q_067No text annotation
IL_4V6Q_068Minor groove platform
IL_4V6Q_069Bacterial 5S Loop E
IL_4V6Q_192No text annotation
IL_4V6Q_070Triple sheared with non-canonical cWW
IL_4V6Q_071Single bulged A
IL_4V6Q_072Minor groove platform
IL_4V6Q_073No text annotation
IL_4V6Q_0748x7 Sarcin-Ricin; G-bulge
IL_4V6Q_0757x6 Sarcin-Ricin; G-bulge
IL_4V6Q_076No text annotation
IL_4V6Q_077No text annotation
IL_4V6Q_078No text annotation
IL_4V6Q_193No text annotation
IL_4V6Q_079No text annotation
IL_4V6Q_080Double sheared
IL_4V6Q_081No text annotation
IL_4V6Q_082AAA cross-strand stack
IL_4V6Q_083Tandem non-canonical cWW pairs
IL_4V6Q_219Isolated non-canonical cWW pair
IL_4V6Q_084tHW-tHW cross-strand stack
IL_4V6Q_085Isolated near basepair
IL_4V6Q_194Tandem non-canonical cWW pairs
IL_4V6Q_086Single bulged A
IL_4V6Q_087Quadruple sheared
IL_4V6Q_088Major groove platform
IL_4V6Q_089Multiple bulged bases
IL_4V6Q_090Single stack bend
IL_4V6Q_091No text annotation
IL_4V6Q_092No text annotation
IL_4V6Q_220Single stack bend
IL_4V6Q_0937x7 Sarcin-Ricin with intercalated A; G-bulge
IL_4V6Q_094Minor groove platform
IL_4V6Q_095C-loop with bulged stacked A's
IL_4V6Q_096Isolated non-canonical cWW pair
IL_4V6Q_097Double sheared with non-canonical cWW
IL_4V6Q_098Major groove intercalation
IL_4V6Q_099No text annotation
IL_4V6Q_100Single bulged C
IL_4V6Q_101UAA/GAN
IL_4V6Q_195Isolated non-canonical cWW pair
IL_4V6Q_102Multiple bulged bases
IL_4V6Q_103Single bulged U
IL_4V6Q_104Kink-turn related
IL_4V6Q_105No text annotation
IL_4V6Q_106Isolated non-canonical cWW pair
IL_4V6Q_107Tandem non-canonical cWW pairs
IL_4V6Q_108Kink-turn
IL_4V6Q_109No text annotation
IL_4V6Q_110Major groove platform
IL_4V6Q_196No text annotation
IL_4V6Q_221No text annotation
IL_4V6Q_111No text annotation
IL_4V6Q_112No text annotation
IL_4V6Q_113Kink-turn
IL_4V6Q_1148x7 Sarcin-Ricin; G-bulge
IL_4V6Q_115Major groove platform; stack outside cWW
IL_4V6Q_222C-loop
IL_4V6Q_116No text annotation
IL_4V6Q_117UAA/GAN
IL_4V6Q_118tSH-tHW-tHS
IL_4V6Q_119No text annotation
IL_4V6Q_223No text annotation
IL_4V6Q_120UAA/GAN
IL_4V6Q_121No text annotation
IL_4V6Q_224Tandem non-canonical cWW pairs
IL_4V6Q_122tSH-tHW
IL_4V6Q_123No text annotation
IL_4V6Q_1245x5 Sarcin-Ricin with intercalated A; G-bulge
IL_4V6Q_197tSH-tHW-tHS
IL_4V6Q_225No text annotation
IL_4V6Q_198No text annotation
IL_4V6Q_125No text annotation
IL_4V6Q_126Single bulged A
IL_4V6Q_127UAA/GAN variation
IL_4V6Q_128No text annotation
IL_4V6Q_129Isolated tWW turn
IL_4V6Q_130Major groove platform; stack outside cWW
IL_4V6Q_199No text annotation
IL_4V6Q_131Intercalated tWH
IL_4V6Q_132tSH-tSH-tHH-tHS
IL_4V6Q_1336x5 Sarcin-Ricin; G-bulge
IL_4V6Q_200No text annotation
IL_4V6Q_226Triple sheared with non-canonical cWW
IL_4V6Q_134No text annotation
IL_4V6Q_135Single bulged C
IL_4V6Q_136Single bulged A
IL_4V6Q_137Kink-turn related
IL_4V6Q_138Minor groove platform, major groove intercalation
IL_4V6Q_201No text annotation
IL_4V6Q_139Isolated non-canonical cWW pair
IL_4V6Q_140No text annotation
IL_4V6Q_141No text annotation
IL_4V6Q_142Isolated cWS basepair
IL_4V6Q_143UAA/GAN related
IL_4V6Q_144Major groove intercalation
IL_4V6Q_145No text annotation
IL_4V6Q_146Major groove platform
IL_4V6Q_147No text annotation
IL_4V6Q_202No text annotation
IL_4V6Q_148No text annotation
IL_4V6Q_203Single bulged U
IL_4V6Q_149No text annotation
IL_4V6Q_204No text annotation
IL_4V6Q_150Isolated tHS basepair with bulges
IL_4V6Q_205No text annotation
IL_4V6Q_151Tandem non-canonical cWW pairs
IL_4V6Q_152Isolated near basepair
IL_4V6Q_153No text annotation
IL_4V6Q_227No text annotation
IL_4V6Q_206No text annotation
IL_4V6Q_207No text annotation
IL_4V6Q_208No text annotation
IL_4V6Q_154Single bulged U
IL_4V6Q_155Double sheared
IL_4V6Q_156Single bulged U
IL_4V6Q_209Major groove platform
IL_4V6Q_157No text annotation
IL_4V6Q_228Major groove platform
IL_4V6Q_158Major groove minor groove platform with extra cWW
IL_4V6Q_159Double sheared with non-canonical cWW
IL_4V6Q_210Major groove platform
IL_4V6Q_160No text annotation
IL_4V6Q_161Isolated non-canonical cWW with bulges
IL_4V6Q_162No text annotation
IL_4V6Q_163No text annotation
IL_4V6Q_211Isolated near basepair
IL_4V6Q_164No text annotation
IL_4V6Q_165Single bulged A
IL_4V6Q_166tSH-tHS-tHW
IL_4V6Q_167Sarcin-Ricin target in LSU H95; G-bulge
IL_4V6Q_229Isolated non-canonical cWW pair
IL_4V6Q_212Tandem non-canonical cWW pairs
IL_4V6Q_168C-loop
IL_4V6Q_169UAA/GAN related, with intercalation
IL_4V6Q_170Multiple bulged bases
IL_4V6Q_171UAA/GAN with extra cWW
IL_4V6Q_172No text annotation
IL_4V6Q_230Isolated non-canonical cWW pair
IL_4V6Q_173Tandem non-canonical cWW pairs
IL_4V6Q_174Single bulged C
IL_4V6Q_175No text annotation
IL_4V6Q_176No text annotation

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
J3_4V6Q_001No text annotation
J3_4V6Q_027No text annotation
J3_4V6Q_028No text annotation
J3_4V6Q_002No text annotation
J3_4V6Q_029No text annotation
J3_4V6Q_003No text annotation
J3_4V6Q_004No text annotation
J3_4V6Q_030No text annotation
J3_4V6Q_005No text annotation
J3_4V6Q_006No text annotation
J3_4V6Q_007No text annotation
J3_4V6Q_031No text annotation
J3_4V6Q_008No text annotation
J3_4V6Q_038No text annotation
J3_4V6Q_009No text annotation
J3_4V6Q_010No text annotation
J3_4V6Q_032No text annotation
J3_4V6Q_011No text annotation
J3_4V6Q_033No text annotation
J3_4V6Q_039No text annotation
J3_4V6Q_012No text annotation
J3_4V6Q_013No text annotation
J3_4V6Q_014No text annotation
J3_4V6Q_034No text annotation
J3_4V6Q_040No text annotation
J3_4V6Q_035No text annotation
J3_4V6Q_015No text annotation
J3_4V6Q_016No text annotation
J3_4V6Q_017No text annotation
J3_4V6Q_036No text annotation
J3_4V6Q_018No text annotation
J3_4V6Q_019No text annotation
J3_4V6Q_020No text annotation
J3_4V6Q_021No text annotation
J3_4V6Q_037No text annotation
J3_4V6Q_022Kink-turn 3-way junction
J3_4V6Q_023No text annotation
J3_4V6Q_041No text annotation
J3_4V6Q_024No text annotation
J3_4V6Q_025No text annotation
J3_4V6Q_026No text annotation
J4_4V6Q_016No text annotation
J4_4V6Q_001No text annotation
J4_4V6Q_002No text annotation
J4_4V6Q_003No text annotation
J4_4V6Q_017No text annotation
J4_4V6Q_004No text annotation
J4_4V6Q_005tRNA junction
J4_4V6Q_006No text annotation
J4_4V6Q_007No text annotation
J4_4V6Q_008No text annotation
J4_4V6Q_009No text annotation
J4_4V6Q_018No text annotation
J4_4V6Q_010No text annotation
J4_4V6Q_019No text annotation
J4_4V6Q_011No text annotation
J4_4V6Q_012No text annotation
J4_4V6Q_020No text annotation
J4_4V6Q_013No text annotation
J4_4V6Q_014No text annotation
J4_4V6Q_015No text annotation
J5_4V6Q_001No text annotation
J5_4V6Q_002No text annotation
J5_4V6Q_003No text annotation
J5_4V6Q_004No text annotation
J5_4V6Q_005No text annotation
J5_4V6Q_006No text annotation
J5_4V6Q_007No text annotation
J5_4V6Q_008No text annotation
J5_4V6Q_009No text annotation
J5_4V6Q_011No text annotation
J5_4V6Q_010No text annotation
J6_4V6Q_002No text annotation
J6_4V6Q_001No text annotation
J7_4V6Q_001No text annotation
J7_4V6Q_002No text annotation

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