HL_4V6Q_016

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_016 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1457

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V6Q|1|AA|C|726
4V6Q|1|AA|G|727
4V6Q|1|AA|A|728
4V6Q|1|AA|A|729
4V6Q|1|AA|G|730
4V6Q|1|AA|G|731

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AR

30S ribosomal protein S15

Chain AU

30S ribosomal protein S18

Chain AX

30S ribosomal protein S21