HL_4V6Q_017

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGAUUAGAUACCC

Length

13 nucleotides

Bulged bases

4V6Q|1|AA|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|AA|G|785
4V6Q|1|AA|G|786
4V6Q|1|AA|A|787
4V6Q|1|AA|U|788
4V6Q|1|AA|U|789
4V6Q|1|AA|A|790
4V6Q|1|AA|G|791
4V6Q|1|AA|A|792
4V6Q|1|AA|U|793
4V6Q|1|AA|A|794
4V6Q|1|AA|C|795
4V6Q|1|AA|C|796
4V6Q|1|AA|C|797

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

mRNA

Chain AD

Transfer RNA; tRNA

Chain AN

30S ribosomal protein S11

Chain AX

30S ribosomal protein S21

Chain BB

Large subunit ribosomal RNA; LSU rRNA