HL_4V6Q_035
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- AG(5MU)(PSU)CGAGUCU
- Length
- 11 nucleotides
- Bulged bases
- 4V6Q|1|AB|C|56, 4V6Q|1|AB|G|57
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6Q_035 not in the Motif Atlas
- Homologous match to HL_4WQ1_225
- Geometric discrepancy: 0.4793
- The information below is about HL_4WQ1_225
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6Q|1|AB|A|52
4V6Q|1|AB|G|53
4V6Q|1|AB|5MU|54
4V6Q|1|AB|PSU|55
4V6Q|1|AB|C|56
4V6Q|1|AB|G|57
4V6Q|1|AB|A|58
4V6Q|1|AB|G|59
4V6Q|1|AB|U|60
4V6Q|1|AB|C|61
4V6Q|1|AB|U|62
Current chains
- Chain AB
- A site tRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BO
- 50S ribosomal protein L16
Coloring options: