HL_4V6Q_036
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 4V6Q|1|AD|C|17, 4V6Q|1|AD|U|18, 4V6Q|1|AD|G|19, 4V6Q|1|AD|G|20
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6Q_036 not in the Motif Atlas
- Homologous match to HL_4YYE_001
- Geometric discrepancy: 0.2729
- The information below is about HL_4YYE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6Q|1|AD|C|13
4V6Q|1|AD|A|14
4V6Q|1|AD|G|15
4V6Q|1|AD|C|16
4V6Q|1|AD|C|17
4V6Q|1|AD|U|18
4V6Q|1|AD|G|19
4V6Q|1|AD|G|20
4V6Q|1|AD|H2U|21
4V6Q|1|AD|A|22
4V6Q|1|AD|G|23
Current chains
- Chain AD
- P site tRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 50S ribosomal protein L1
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