3D structure

PDB id
4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
CGAAUAG
Length
7 nucleotides
Bulged bases
4V6Q|1|BB|A|613, 4V6Q|1|BB|U|615
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6Q_058 not in the Motif Atlas
Homologous match to HL_5J7L_151
Geometric discrepancy: 0.1961
The information below is about HL_5J7L_151
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_80922.2
Basepair signature
cWW-tSH-F
Number of instances in this motif group
3

Unit IDs

4V6Q|1|BB|C|611
4V6Q|1|BB|G|612
4V6Q|1|BB|A|613
4V6Q|1|BB|A|614
4V6Q|1|BB|U|615
4V6Q|1|BB|A|616
4V6Q|1|BB|G|617

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain BF
50S ribosomal protein L4

Coloring options:


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