HL_4V6Q_075

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4V6Q|1|BB|U|1396

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_075 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.5772

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4V6Q|1|BB|G|1389
4V6Q|1|BB|U|1390
4V6Q|1|BB|U|1391
4V6Q|1|BB|A|1392
4V6Q|1|BB|A|1393
4V6Q|1|BB|U|1394
4V6Q|1|BB|A|1395
4V6Q|1|BB|U|1396
4V6Q|1|BB|U|1397
4V6Q|1|BB|C|1398

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BV

50S ribosomal protein L23