3D structure

PDB id
4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
CGACAC(6MZ)G
Length
8 nucleotides
Bulged bases
4V6Q|1|BB|A|1616
QA status
Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6Q_080 not in the Motif Atlas
Homologous match to HL_5J7L_173
Geometric discrepancy: 0.4012
The information below is about HL_5J7L_173
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

4V6Q|1|BB|C|1612
4V6Q|1|BB|G|1613
4V6Q|1|BB|A|1614
4V6Q|1|BB|C|1615
4V6Q|1|BB|A|1616
4V6Q|1|BB|C|1617
4V6Q|1|BB|6MZ|1618
4V6Q|1|BB|G|1619

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B5
50S ribosomal protein L34
Chain BU
50S ribosomal protein L22

Coloring options:


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