HL_4V6Q_086

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

4V6Q|1|BB|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_086 not in the Motif Atlas

Homologous match to HL_4WF9_044

Geometric discrepancy: 0.3121

The information below is about HL_4WF9_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|BB|C|1806
4V6Q|1|BB|G|1807
4V6Q|1|BB|A|1808
4V6Q|1|BB|A|1809
4V6Q|1|BB|A|1810
4V6Q|1|BB|G|1811

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BZ

50S ribosomal protein L28