HL_4V6Q_094

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4V6Q|1|BB|A|2268, 4V6Q|1|BB|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_094 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.5541

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

4V6Q|1|BB|C|2264
4V6Q|1|BB|U|2265
4V6Q|1|BB|A|2266
4V6Q|1|BB|A|2267
4V6Q|1|BB|A|2268
4V6Q|1|BB|G|2269
4V6Q|1|BB|A|2270
4V6Q|1|BB|G|2271
4V6Q|1|BB|U|2272
4V6Q|1|BB|A|2273
4V6Q|1|BB|A|2274
4V6Q|1|BB|C|2275
4V6Q|1|BB|G|2276

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BO

50S ribosomal protein L16

Chain BY

50S ribosomal protein L27