HL_4V6Q_099

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_099 not in the Motif Atlas

Homologous match to HL_9DFE_057

Geometric discrepancy: 0.3132

The information below is about HL_9DFE_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V6Q|1|BB|U|2404
4V6Q|1|BB|G|2405
4V6Q|1|BB|A|2406
4V6Q|1|BB|A|2407
4V6Q|1|BB|U|2408
4V6Q|1|BB|G|2409
4V6Q|1|BB|G|2410
4V6Q|1|BB|A|2411
4V6Q|1|BB|A|2412
4V6Q|1|BB|G|2413

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L15