HL_4V6Q_100

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

4V6Q|1|BB|U|2473

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_100 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2871

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V6Q|1|BB|A|2471
4V6Q|1|BB|G|2472
4V6Q|1|BB|U|2473
4V6Q|1|BB|U|2474
4V6Q|1|BB|C|2475
4V6Q|1|BB|A|2476
4V6Q|1|BB|U|2477
4V6Q|1|BB|A|2478
4V6Q|1|BB|U|2479

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6