HL_4V6Q_115
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- UGAUAUGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6Q_115 not in the Motif Atlas
- Homologous match to HL_5J7L_135
- Geometric discrepancy: 0.4995
- The information below is about HL_5J7L_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80241.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V6Q|1|BB|U|87
4V6Q|1|BB|G|88
4V6Q|1|BB|A|89
4V6Q|1|BB|U|90
4V6Q|1|BB|A|91
4V6Q|1|BB|U|92
4V6Q|1|BB|G|93
4V6Q|1|BB|A|94
4V6Q|1|BB|A|95
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain B0
- 50S ribosomal protein L29
- Chain BV
- 50S ribosomal protein L23
- Chain BW
- 50S ribosomal protein L24
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