HL_4V6Q_122

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GUGCAAUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Q_122 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.3704

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V6Q|1|BB|G|2323
4V6Q|1|BB|U|2324
4V6Q|1|BB|G|2325
4V6Q|1|BB|C|2326
4V6Q|1|BB|A|2327
4V6Q|1|BB|A|2328
4V6Q|1|BB|U|2329
4V6Q|1|BB|G|2330
4V6Q|1|BB|G|2331
4V6Q|1|BB|C|2332

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L5

Chain BY

50S ribosomal protein L27