HL_4V6R_008

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6R_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.2655

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6R|1|AA|A|320
4V6R|1|AA|A|321
4V6R|1|AA|C|322
4V6R|1|AA|U|323
4V6R|1|AA|G|324
4V6R|1|AA|A|325
4V6R|1|AA|G|326
4V6R|1|AA|A|327
4V6R|1|AA|C|328
4V6R|1|AA|A|329
4V6R|1|AA|C|330
4V6R|1|AA|G|331
4V6R|1|AA|G|332
4V6R|1|AA|U|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AS

30S ribosomal protein S16

Chain AW

30S ribosomal protein S20