4V6R Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6R_001 | No text annotation | ||
| HL_4V6R_110 | No text annotation | ||
| HL_4V6R_002 | No text annotation | ||
| HL_4V6R_003 | GNRA | ||
| HL_4V6R_004 | GNRA | ||
| HL_4V6R_005 | UNCG | ||
| HL_4V6R_006 | No text annotation | ||
| HL_4V6R_123 | GNRA related | ||
| HL_4V6R_007 | GNRA | ||
| HL_4V6R_008 | No text annotation | ||
| HL_4V6R_009 | UNCG | ||
| HL_4V6R_010 | GNRA | ||
| HL_4V6R_011 | UNCG | ||
| HL_4V6R_111 | No text annotation | ||
| HL_4V6R_012 | No text annotation | ||
| HL_4V6R_013 | No text annotation | ||
| HL_4V6R_112 | GNRA variation | ||
| HL_4V6R_014 | No text annotation | ||
| HL_4V6R_015 | No text annotation | ||
| HL_4V6R_016 | GNRA | ||
| HL_4V6R_017 | No text annotation | ||
| HL_4V6R_018 | No text annotation | ||
| HL_4V6R_124 | No text annotation | ||
| HL_4V6R_019 | GNRA | ||
| HL_4V6R_020 | GNRA | ||
| HL_4V6R_021 | No text annotation | ||
| HL_4V6R_022 | GNRA | ||
| HL_4V6R_023 | No text annotation | ||
| HL_4V6R_024 | GNRA | ||
| HL_4V6R_025 | T-loop related | ||
| HL_4V6R_026 | No text annotation | ||
| HL_4V6R_027 | GNRA | ||
| HL_4V6R_028 | UNCG variation | ||
| HL_4V6R_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V6R_030 | No text annotation | ||
| HL_4V6R_031 | No text annotation | ||
| HL_4V6R_032 | GNRA | ||
| HL_4V6R_033 | No text annotation | ||
| HL_4V6R_113 | No text annotation | ||
| HL_4V6R_034 | tRNA anticodon loop | ||
| HL_4V6R_035 | No text annotation | ||
| HL_4V6R_036 | No text annotation | ||
| HL_4V6R_114 | No text annotation | ||
| HL_4V6R_037 | tRNA anticodon loop | ||
| HL_4V6R_115 | No text annotation | ||
| HL_4V6R_038 | T-loop with 2 stacked bulged bases | ||
| HL_4V6R_039 | No text annotation | ||
| HL_4V6R_040 | No text annotation | ||
| HL_4V6R_041 | No text annotation | ||
| HL_4V6R_042 | No text annotation | ||
| HL_4V6R_116 | No text annotation | ||
| HL_4V6R_043 | No text annotation | ||
| HL_4V6R_044 | UNCG | ||
| HL_4V6R_045 | No text annotation | ||
| HL_4V6R_046 | No text annotation | ||
| HL_4V6R_047 | No text annotation | ||
| HL_4V6R_048 | No text annotation | ||
| HL_4V6R_049 | T-loop with 2 stacked bulged bases | ||
| HL_4V6R_050 | No text annotation | ||
| HL_4V6R_051 | T-loop with unstacked turn | ||
| HL_4V6R_052 | No text annotation | ||
| HL_4V6R_125 | No text annotation | ||
| HL_4V6R_053 | No text annotation | ||
| HL_4V6R_117 | No text annotation | ||
| HL_4V6R_054 | GNRA | ||
| HL_4V6R_055 | GNRA | ||
| HL_4V6R_056 | No text annotation | ||
| HL_4V6R_057 | No text annotation | ||
| HL_4V6R_058 | No text annotation | ||
| HL_4V6R_059 | GNRA | ||
| HL_4V6R_060 | No text annotation | ||
| HL_4V6R_126 | GNRA | ||
| HL_4V6R_061 | GNRA wlth tandem sheared | ||
| HL_4V6R_062 | No text annotation | ||
| HL_4V6R_063 | UNCG variation | ||
| HL_4V6R_064 | No text annotation | ||
| HL_4V6R_065 | No text annotation | ||
| HL_4V6R_066 | No text annotation | ||
| HL_4V6R_118 | GNRA | ||
| HL_4V6R_067 | No text annotation | ||
| HL_4V6R_068 | No text annotation | ||
| HL_4V6R_069 | No text annotation | ||
| HL_4V6R_070 | Externally structured | ||
| HL_4V6R_071 | GNRA | ||
| HL_4V6R_072 | No text annotation | ||
| HL_4V6R_127 | T-loop with 2 stacked bulged bases | ||
| HL_4V6R_073 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6R_074 | GNRA | ||
| HL_4V6R_075 | No text annotation | ||
| HL_4V6R_076 | No text annotation | ||
| HL_4V6R_077 | No text annotation | ||
| HL_4V6R_078 | UNCG | ||
| HL_4V6R_079 | No text annotation | ||
| HL_4V6R_080 | No text annotation | ||
| HL_4V6R_081 | GNRA | ||
| HL_4V6R_082 | UNCG | ||
| HL_4V6R_083 | No text annotation | ||
| HL_4V6R_084 | No text annotation | ||
| HL_4V6R_085 | No text annotation | ||
| HL_4V6R_086 | No text annotation | ||
| HL_4V6R_087 | GNRA | ||
| HL_4V6R_088 | No text annotation | ||
| HL_4V6R_089 | No text annotation | ||
| HL_4V6R_090 | No text annotation | ||
| HL_4V6R_091 | No text annotation | ||
| HL_4V6R_092 | No text annotation | ||
| HL_4V6R_119 | No text annotation | ||
| HL_4V6R_093 | No text annotation | ||
| HL_4V6R_094 | No text annotation | ||
| HL_4V6R_095 | No text annotation | ||
| HL_4V6R_128 | No text annotation | ||
| HL_4V6R_096 | tRNA anticodon loop | ||
| HL_4V6R_120 | Pseudoknot geometry | ||
| HL_4V6R_097 | GNRA | ||
| HL_4V6R_098 | GNRA | ||
| HL_4V6R_121 | No text annotation | ||
| HL_4V6R_099 | No text annotation | ||
| HL_4V6R_100 | UNCG variation | ||
| HL_4V6R_101 | No text annotation | ||
| HL_4V6R_102 | No text annotation | ||
| HL_4V6R_103 | GNRA | ||
| HL_4V6R_104 | GNRA | ||
| HL_4V6R_122 | No text annotation | ||
| HL_4V6R_105 | Ribsomal LSU H95 | ||
| HL_4V6R_106 | No text annotation | ||
| HL_4V6R_107 | No text annotation | ||
| HL_4V6R_108 | No text annotation | ||
| HL_4V6R_109 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6R_001 | Isolated non-canonical cWW pair | ||
| IL_4V6R_002 | Single bulged A | ||
| IL_4V6R_003 | Decoding loop related | ||
| IL_4V6R_004 | Minor groove platform | ||
| IL_4V6R_174 | Isolated non-canonical cWW pair | ||
| IL_4V6R_005 | Multiple bulged bases | ||
| IL_4V6R_006 | Minor groove platform with extra cWW | ||
| IL_4V6R_007 | Minor groove platform | ||
| IL_4V6R_008 | Single bulged G, near cWW | ||
| IL_4V6R_009 | Isolated non-canonical cWW pair | ||
| IL_4V6R_010 | No text annotation | ||
| IL_4V6R_175 | No text annotation | ||
| IL_4V6R_011 | Isolated cWS basepair | ||
| IL_4V6R_012 | Isolated cWH basepair | ||
| IL_4V6R_013 | No text annotation | ||
| IL_4V6R_176 | tWH-tWH-tHW-tHW | ||
| IL_4V6R_014 | No text annotation | ||
| IL_4V6R_177 | No text annotation | ||
| IL_4V6R_015 | Kink-turn with non-sequential stacking | ||
| IL_4V6R_211 | No text annotation | ||
| IL_4V6R_016 | No text annotation | ||
| IL_4V6R_178 | No text annotation | ||
| IL_4V6R_017 | No text annotation | ||
| IL_4V6R_018 | Single bulged U | ||
| IL_4V6R_212 | No text annotation | ||
| IL_4V6R_019 | No text annotation | ||
| IL_4V6R_179 | No text annotation | ||
| IL_4V6R_020 | No text annotation | ||
| IL_4V6R_180 | No text annotation | ||
| IL_4V6R_213 | No text annotation | ||
| IL_4V6R_021 | No text annotation | ||
| IL_4V6R_181 | No text annotation | ||
| IL_4V6R_214 | No text annotation | ||
| IL_4V6R_022 | Tandem non-canonical cWW pairs | ||
| IL_4V6R_023 | Single stack bend | ||
| IL_4V6R_024 | SSU/LSU pseudoknot | ||
| IL_4V6R_025 | Kink-turn related | ||
| IL_4V6R_026 | No text annotation | ||
| IL_4V6R_027 | tSH-tHW-tHS | ||
| IL_4V6R_028 | Major groove platform | ||
| IL_4V6R_029 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6R_030 | No text annotation | ||
| IL_4V6R_215 | No text annotation | ||
| IL_4V6R_031 | Major groove platform; stack outside cWW | ||
| IL_4V6R_032 | Single stack bend | ||
| IL_4V6R_033 | Tandem non-canonical cWW pairs | ||
| IL_4V6R_034 | No text annotation | ||
| IL_4V6R_035 | Kink-turn | ||
| IL_4V6R_182 | Isolated non-canonical cWW pair | ||
| IL_4V6R_036 | Left turn | ||
| IL_4V6R_037 | tSH-tHW-tHS | ||
| IL_4V6R_038 | Isolated non-canonical cWW pair | ||
| IL_4V6R_039 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V6R_040 | Single bulged A | ||
| IL_4V6R_041 | Single bulged G | ||
| IL_4V6R_042 | Minor groove platform | ||
| IL_4V6R_043 | Minor groove platform | ||
| IL_4V6R_044 | Minor groove platform | ||
| IL_4V6R_216 | Single stack bend | ||
| IL_4V6R_045 | No text annotation | ||
| IL_4V6R_183 | Isolated near basepair | ||
| IL_4V6R_046 | No text annotation | ||
| IL_4V6R_184 | No text annotation | ||
| IL_4V6R_047 | Minor groove platform | ||
| IL_4V6R_048 | Single bulged A | ||
| IL_4V6R_049 | Isolated non-canonical cWW pair | ||
| IL_4V6R_050 | No text annotation | ||
| IL_4V6R_051 | Minor groove platform | ||
| IL_4V6R_052 | No text annotation | ||
| IL_4V6R_185 | No text annotation | ||
| IL_4V6R_053 | No text annotation | ||
| IL_4V6R_054 | No text annotation | ||
| IL_4V6R_055 | Double sheared with non-canonical cWW | ||
| IL_4V6R_056 | No text annotation | ||
| IL_4V6R_057 | No text annotation | ||
| IL_4V6R_058 | No text annotation | ||
| IL_4V6R_186 | Isolated non-canonical cWW pair | ||
| IL_4V6R_059 | No text annotation | ||
| IL_4V6R_187 | Decoding loop related | ||
| IL_4V6R_217 | Isolated non-canonical cWW pair | ||
| IL_4V6R_060 | Tandem non-canonical cWW pairs | ||
| IL_4V6R_188 | Partly complementary | ||
| IL_4V6R_061 | No text annotation | ||
| IL_4V6R_062 | Triple sheared related | ||
| IL_4V6R_063 | No text annotation | ||
| IL_4V6R_064 | No text annotation | ||
| IL_4V6R_065 | No text annotation | ||
| IL_4V6R_066 | Major groove intercalation | ||
| IL_4V6R_067 | No text annotation | ||
| IL_4V6R_068 | Minor groove platform | ||
| IL_4V6R_069 | Symmetric double minor groove platform | ||
| IL_4V6R_070 | Bacterial 5S Loop E | ||
| IL_4V6R_189 | No text annotation | ||
| IL_4V6R_071 | No text annotation | ||
| IL_4V6R_072 | Single bulged A | ||
| IL_4V6R_073 | Minor groove platform | ||
| IL_4V6R_074 | No text annotation | ||
| IL_4V6R_075 | Single stack bend | ||
| IL_4V6R_076 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6R_077 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V6R_078 | No text annotation | ||
| IL_4V6R_079 | No text annotation | ||
| IL_4V6R_080 | No text annotation | ||
| IL_4V6R_081 | No text annotation | ||
| IL_4V6R_082 | Double sheared | ||
| IL_4V6R_083 | AAA cross-strand stack | ||
| IL_4V6R_084 | Tandem non-canonical cWW pairs | ||
| IL_4V6R_190 | Isolated non-canonical cWW pair | ||
| IL_4V6R_085 | tHW-tHW cross-strand stack | ||
| IL_4V6R_218 | No text annotation | ||
| IL_4V6R_191 | Tandem non-canonical cWW pairs | ||
| IL_4V6R_086 | Single bulged A | ||
| IL_4V6R_087 | Quadruple sheared | ||
| IL_4V6R_088 | Major groove platform | ||
| IL_4V6R_089 | Multiple bulged bases | ||
| IL_4V6R_090 | Single stack bend | ||
| IL_4V6R_192 | No text annotation | ||
| IL_4V6R_091 | No text annotation | ||
| IL_4V6R_092 | No text annotation | ||
| IL_4V6R_219 | Single stack bend | ||
| IL_4V6R_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6R_094 | Minor groove platform | ||
| IL_4V6R_095 | C-loop with bulged stacked A's | ||
| IL_4V6R_096 | Isolated non-canonical cWW pair | ||
| IL_4V6R_097 | No text annotation | ||
| IL_4V6R_098 | Major groove intercalation | ||
| IL_4V6R_099 | Tandem non-canonical cWW pairs | ||
| IL_4V6R_220 | Single bulged C | ||
| IL_4V6R_100 | UAA/GAN | ||
| IL_4V6R_101 | Tandem non-canonical cWW pairs | ||
| IL_4V6R_221 | SSU/LSU pseudoknot | ||
| IL_4V6R_102 | Single bulged U | ||
| IL_4V6R_103 | Kink-turn related | ||
| IL_4V6R_193 | No text annotation | ||
| IL_4V6R_104 | No text annotation | ||
| IL_4V6R_105 | Isolated non-canonical cWW pair | ||
| IL_4V6R_194 | Tandem non-canonical cWW pairs | ||
| IL_4V6R_106 | No text annotation | ||
| IL_4V6R_107 | No text annotation | ||
| IL_4V6R_195 | Kink-turn | ||
| IL_4V6R_108 | No text annotation | ||
| IL_4V6R_109 | Major groove platform | ||
| IL_4V6R_196 | No text annotation | ||
| IL_4V6R_222 | No text annotation | ||
| IL_4V6R_110 | Tandem non-canonical cWW pairs | ||
| IL_4V6R_111 | No text annotation | ||
| IL_4V6R_112 | Kink-turn | ||
| IL_4V6R_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6R_223 | Major groove platform; stack outside cWW | ||
| IL_4V6R_224 | No text annotation | ||
| IL_4V6R_114 | No text annotation | ||
| IL_4V6R_197 | UAA/GAN | ||
| IL_4V6R_115 | tSH-tHW-tHS | ||
| IL_4V6R_116 | No text annotation | ||
| IL_4V6R_225 | No text annotation | ||
| IL_4V6R_117 | UAA/GAN | ||
| IL_4V6R_118 | Tandem non-canonical cWW pairs | ||
| IL_4V6R_119 | No text annotation | ||
| IL_4V6R_120 | No text annotation | ||
| IL_4V6R_121 | tSH-tHW-tHS | ||
| IL_4V6R_122 | No text annotation | ||
| IL_4V6R_198 | No text annotation | ||
| IL_4V6R_123 | Single bulged A | ||
| IL_4V6R_124 | UAA/GAN variation | ||
| IL_4V6R_125 | No text annotation | ||
| IL_4V6R_226 | No text annotation | ||
| IL_4V6R_126 | Isolated tWW turn | ||
| IL_4V6R_127 | Major groove platform; stack outside cWW | ||
| IL_4V6R_199 | No text annotation | ||
| IL_4V6R_128 | Intercalated tWH | ||
| IL_4V6R_129 | tSH-tSH-tHH-tHS | ||
| IL_4V6R_130 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6R_227 | Triple sheared with non-canonical cWW | ||
| IL_4V6R_131 | No text annotation | ||
| IL_4V6R_132 | Single bulged C | ||
| IL_4V6R_133 | Single bulged A | ||
| IL_4V6R_134 | Kink-turn related | ||
| IL_4V6R_135 | No text annotation | ||
| IL_4V6R_200 | No text annotation | ||
| IL_4V6R_136 | Isolated non-canonical cWW pair | ||
| IL_4V6R_137 | No text annotation | ||
| IL_4V6R_138 | No text annotation | ||
| IL_4V6R_139 | UAA/GAN related | ||
| IL_4V6R_140 | Multiple bulged bases | ||
| IL_4V6R_201 | No text annotation | ||
| IL_4V6R_141 | No text annotation | ||
| IL_4V6R_142 | Major groove platform | ||
| IL_4V6R_143 | No text annotation | ||
| IL_4V6R_228 | No text annotation | ||
| IL_4V6R_144 | No text annotation | ||
| IL_4V6R_202 | Single bulged U | ||
| IL_4V6R_145 | No text annotation | ||
| IL_4V6R_203 | No text annotation | ||
| IL_4V6R_146 | Isolated tHS basepair with bulges | ||
| IL_4V6R_147 | Isolated non-canonical cWW pair | ||
| IL_4V6R_148 | Isolated near basepair | ||
| IL_4V6R_149 | No text annotation | ||
| IL_4V6R_150 | No text annotation | ||
| IL_4V6R_151 | Other IL | ||
| IL_4V6R_204 | No text annotation | ||
| IL_4V6R_152 | Single bulged U | ||
| IL_4V6R_205 | Double sheared | ||
| IL_4V6R_153 | No text annotation | ||
| IL_4V6R_154 | No text annotation | ||
| IL_4V6R_206 | Major groove platform | ||
| IL_4V6R_155 | No text annotation | ||
| IL_4V6R_207 | No text annotation | ||
| IL_4V6R_156 | No text annotation | ||
| IL_4V6R_157 | Double sheared with non-canonical cWW | ||
| IL_4V6R_208 | Major groove platform | ||
| IL_4V6R_158 | No text annotation | ||
| IL_4V6R_159 | Isolated non-canonical cWW with bulges | ||
| IL_4V6R_160 | No text annotation | ||
| IL_4V6R_161 | No text annotation | ||
| IL_4V6R_209 | Isolated near basepair | ||
| IL_4V6R_162 | No text annotation | ||
| IL_4V6R_163 | Single bulged A | ||
| IL_4V6R_164 | tSH-tHS-tHW | ||
| IL_4V6R_165 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V6R_166 | C-loop | ||
| IL_4V6R_167 | UAA/GAN related, with intercalation | ||
| IL_4V6R_168 | Multiple bulged bases | ||
| IL_4V6R_169 | UAA/GAN with extra cWW | ||
| IL_4V6R_170 | No text annotation | ||
| IL_4V6R_210 | Isolated non-canonical cWW pair | ||
| IL_4V6R_171 | Single bulged C | ||
| IL_4V6R_172 | No text annotation | ||
| IL_4V6R_173 | tHS double platform |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6R_001 | No text annotation | ||
| J3_4V6R_026 | No text annotation | ||
| J3_4V6R_002 | No text annotation | ||
| J3_4V6R_027 | No text annotation | ||
| J3_4V6R_003 | No text annotation | ||
| J3_4V6R_004 | No text annotation | ||
| J3_4V6R_028 | No text annotation | ||
| J3_4V6R_005 | No text annotation | ||
| J3_4V6R_006 | No text annotation | ||
| J3_4V6R_007 | No text annotation | ||
| J3_4V6R_029 | No text annotation | ||
| J3_4V6R_008 | No text annotation | ||
| J3_4V6R_037 | No text annotation | ||
| J3_4V6R_009 | No text annotation | ||
| J3_4V6R_010 | No text annotation | ||
| J3_4V6R_011 | No text annotation | ||
| J3_4V6R_038 | No text annotation | ||
| J3_4V6R_030 | No text annotation | ||
| J3_4V6R_039 | No text annotation | ||
| J3_4V6R_012 | No text annotation | ||
| J3_4V6R_013 | No text annotation | ||
| J3_4V6R_014 | No text annotation | ||
| J3_4V6R_031 | No text annotation | ||
| J3_4V6R_040 | No text annotation | ||
| J3_4V6R_032 | No text annotation | ||
| J3_4V6R_015 | No text annotation | ||
| J3_4V6R_016 | No text annotation | ||
| J3_4V6R_017 | No text annotation | ||
| J3_4V6R_018 | No text annotation | ||
| J3_4V6R_033 | No text annotation | ||
| J3_4V6R_019 | No text annotation | ||
| J3_4V6R_020 | No text annotation | ||
| J3_4V6R_041 | No text annotation | ||
| J3_4V6R_034 | No text annotation | ||
| J3_4V6R_035 | No text annotation | ||
| J3_4V6R_021 | Kink-turn 3-way junction | ||
| J3_4V6R_022 | No text annotation | ||
| J3_4V6R_036 | No text annotation | ||
| J3_4V6R_042 | No text annotation | ||
| J3_4V6R_023 | No text annotation | ||
| J3_4V6R_024 | No text annotation | ||
| J3_4V6R_025 | No text annotation | ||
| J4_4V6R_001 | No text annotation | ||
| J4_4V6R_002 | No text annotation | ||
| J4_4V6R_003 | No text annotation | ||
| J4_4V6R_015 | No text annotation | ||
| J4_4V6R_004 | No text annotation | ||
| J4_4V6R_005 | tRNA junction | ||
| J4_4V6R_006 | No text annotation | ||
| J4_4V6R_007 | No text annotation | ||
| J4_4V6R_008 | No text annotation | ||
| J4_4V6R_009 | No text annotation | ||
| J4_4V6R_016 | No text annotation | ||
| J4_4V6R_010 | No text annotation | ||
| J4_4V6R_017 | No text annotation | ||
| J4_4V6R_011 | No text annotation | ||
| J4_4V6R_012 | No text annotation | ||
| J4_4V6R_018 | No text annotation | ||
| J4_4V6R_013 | No text annotation | ||
| J4_4V6R_014 | No text annotation | ||
| J5_4V6R_001 | No text annotation | ||
| J5_4V6R_002 | No text annotation | ||
| J5_4V6R_003 | No text annotation | ||
| J5_4V6R_004 | No text annotation | ||
| J5_4V6R_005 | No text annotation | ||
| J5_4V6R_006 | No text annotation | ||
| J5_4V6R_007 | No text annotation | ||
| J5_4V6R_008 | No text annotation | ||
| J5_4V6R_011 | No text annotation | ||
| J5_4V6R_009 | No text annotation | ||
| J5_4V6R_010 | No text annotation | ||
| J6_4V6R_001 | No text annotation | ||
| J7_4V6R_001 | No text annotation | ||
| J7_4V6R_002 | No text annotation |
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