HL_4V6R_018

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

4V6R|1|AA|G|844, 4V6R|1|AA|A|845

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6R_018 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2797

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V6R|1|AA|C|839
4V6R|1|AA|C|840
4V6R|1|AA|C|841
4V6R|1|AA|U|842
4V6R|1|AA|U|843
4V6R|1|AA|G|844
4V6R|1|AA|A|845
4V6R|1|AA|G|846
4V6R|1|AA|G|847

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AE

30S ribosomal protein S2

Chain AU

30S ribosomal protein S18

Chain AX

30S ribosomal protein S21