HL_4V6R_054

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

4V6R|1|BB|U|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6R_054 not in the Motif Atlas

Homologous match to HL_7A0S_015

Geometric discrepancy: 0.4379

The information below is about HL_7A0S_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V6R|1|BB|C|462
4V6R|1|BB|G|463
4V6R|1|BB|U|464
4V6R|1|BB|G|465
4V6R|1|BB|A|466
4V6R|1|BB|G|467

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BF

50S ribosomal protein L4