HL_4V6R_105

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6R_105 not in the Motif Atlas

Homologous match to HL_7A0S_064

Geometric discrepancy: 0.4177

The information below is about HL_7A0S_064

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_12125.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4V6R|1|BB|U|2701
4V6R|1|BB|G|2702
4V6R|1|BB|C|2703
4V6R|1|BB|C|2704
4V6R|1|BB|A|2705
4V6R|1|BB|A|2706

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L17