3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
UGCCAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6R_105 not in the Motif Atlas
Homologous match to HL_7A0S_064
Geometric discrepancy: 0.4177
The information below is about HL_7A0S_064
Detailed Annotation
Ribsomal LSU H95
Broad Annotation
Ribsomal LSU H95
Motif group
HL_12125.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
12

Unit IDs

4V6R|1|BB|U|2701
4V6R|1|BB|G|2702
4V6R|1|BB|C|2703
4V6R|1|BB|C|2704
4V6R|1|BB|A|2705
4V6R|1|BB|A|2706

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain BP
50S ribosomal protein L17

Coloring options:


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