HL_4V6R_109

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6R_109 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.311

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V6R|1|BB|A|2856
4V6R|1|BB|G|2857
4V6R|1|BB|C|2858
4V6R|1|BB|G|2859
4V6R|1|BB|A|2860
4V6R|1|BB|U|2861

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L19