HL_4V6S_008

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V6S|1|AB|A|196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_008 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.2427

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V6S|1|AB|G|194
4V6S|1|AB|A|195
4V6S|1|AB|A|196
4V6S|1|AB|A|197
4V6S|1|AB|C|198
4V6S|1|AB|A|199
4V6S|1|AB|U|200
4V6S|1|AB|C|201

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A6

50S ribosomal protein L35

Chain AN

50S ribosomal protein L15

Chain AZ

50S ribosomal protein L28