4V6S Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6S_001 | No text annotation | ||
| HL_4V6S_002 | No text annotation | ||
| HL_4V6S_003 | No text annotation | ||
| HL_4V6S_004 | No text annotation | ||
| HL_4V6S_005 | No text annotation | ||
| HL_4V6S_006 | UNCG | ||
| HL_4V6S_007 | No text annotation | ||
| HL_4V6S_110 | No text annotation | ||
| HL_4V6S_008 | No text annotation | ||
| HL_4V6S_009 | No text annotation | ||
| HL_4V6S_010 | No text annotation | ||
| HL_4V6S_011 | T-loop with 1 bulged base | ||
| HL_4V6S_012 | No text annotation | ||
| HL_4V6S_013 | T-loop with unstacked turn | ||
| HL_4V6S_014 | No text annotation | ||
| HL_4V6S_111 | No text annotation | ||
| HL_4V6S_015 | No text annotation | ||
| HL_4V6S_016 | GNRA | ||
| HL_4V6S_017 | GNRA | ||
| HL_4V6S_018 | No text annotation | ||
| HL_4V6S_019 | No text annotation | ||
| HL_4V6S_112 | T-loop with 2 stacked bulged bases | ||
| HL_4V6S_020 | No text annotation | ||
| HL_4V6S_021 | GNRA | ||
| HL_4V6S_022 | No text annotation | ||
| HL_4V6S_113 | No text annotation | ||
| HL_4V6S_023 | No text annotation | ||
| HL_4V6S_024 | No text annotation | ||
| HL_4V6S_114 | No text annotation | ||
| HL_4V6S_025 | UNCG variation | ||
| HL_4V6S_026 | No text annotation | ||
| HL_4V6S_027 | No text annotation | ||
| HL_4V6S_028 | No text annotation | ||
| HL_4V6S_115 | GNRA | ||
| HL_4V6S_029 | No text annotation | ||
| HL_4V6S_030 | No text annotation | ||
| HL_4V6S_031 | No text annotation | ||
| HL_4V6S_032 | No text annotation | ||
| HL_4V6S_033 | GNRA | ||
| HL_4V6S_034 | T-loop with 2 stacked bulged bases | ||
| HL_4V6S_035 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6S_036 | GNRA | ||
| HL_4V6S_037 | No text annotation | ||
| HL_4V6S_038 | No text annotation | ||
| HL_4V6S_039 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6S_106 | No text annotation | ||
| HL_4V6S_040 | UNCG | ||
| HL_4V6S_041 | No text annotation | ||
| HL_4V6S_042 | GNRA | ||
| HL_4V6S_043 | UNCG | ||
| HL_4V6S_044 | No text annotation | ||
| HL_4V6S_045 | No text annotation | ||
| HL_4V6S_046 | No text annotation | ||
| HL_4V6S_047 | No text annotation | ||
| HL_4V6S_048 | No text annotation | ||
| HL_4V6S_049 | No text annotation | ||
| HL_4V6S_050 | No text annotation | ||
| HL_4V6S_051 | No text annotation | ||
| HL_4V6S_052 | No text annotation | ||
| HL_4V6S_053 | No text annotation | ||
| HL_4V6S_054 | No text annotation | ||
| HL_4V6S_055 | No text annotation | ||
| HL_4V6S_056 | No text annotation | ||
| HL_4V6S_107 | No text annotation | ||
| HL_4V6S_057 | Pseudoknot geometry | ||
| HL_4V6S_058 | GNRA | ||
| HL_4V6S_059 | GNRA | ||
| HL_4V6S_060 | No text annotation | ||
| HL_4V6S_061 | No text annotation | ||
| HL_4V6S_062 | No text annotation | ||
| HL_4V6S_063 | No text annotation | ||
| HL_4V6S_064 | GNRA | ||
| HL_4V6S_065 | GNRA | ||
| HL_4V6S_066 | Ribsomal LSU H95 | ||
| HL_4V6S_067 | No text annotation | ||
| HL_4V6S_068 | No text annotation | ||
| HL_4V6S_069 | No text annotation | ||
| HL_4V6S_070 | No text annotation | ||
| HL_4V6S_071 | No text annotation | ||
| HL_4V6S_072 | No text annotation | ||
| HL_4V6S_073 | GNRA | ||
| HL_4V6S_074 | GNRA | ||
| HL_4V6S_075 | No text annotation | ||
| HL_4V6S_076 | GNRA related | ||
| HL_4V6S_077 | GNRA | ||
| HL_4V6S_078 | No text annotation | ||
| HL_4V6S_079 | UNCG | ||
| HL_4V6S_080 | GNRA | ||
| HL_4V6S_081 | UNCG | ||
| HL_4V6S_082 | No text annotation | ||
| HL_4V6S_083 | No text annotation | ||
| HL_4V6S_108 | GNRA variation | ||
| HL_4V6S_084 | GNRA-like with tWH | ||
| HL_4V6S_085 | No text annotation | ||
| HL_4V6S_086 | GNRA | ||
| HL_4V6S_087 | No text annotation | ||
| HL_4V6S_088 | No text annotation | ||
| HL_4V6S_116 | No text annotation | ||
| HL_4V6S_089 | GNRA | ||
| HL_4V6S_090 | GNRA | ||
| HL_4V6S_091 | No text annotation | ||
| HL_4V6S_092 | GNRA | ||
| HL_4V6S_093 | UNCG | ||
| HL_4V6S_094 | GNRA | ||
| HL_4V6S_095 | T-loop related | ||
| HL_4V6S_096 | No text annotation | ||
| HL_4V6S_097 | GNRA | ||
| HL_4V6S_098 | GNRA | ||
| HL_4V6S_099 | T-loop with 3 stacked bulged bases | ||
| HL_4V6S_100 | No text annotation | ||
| HL_4V6S_101 | UNCG | ||
| HL_4V6S_102 | GNRA | ||
| HL_4V6S_103 | No text annotation | ||
| HL_4V6S_104 | No text annotation | ||
| HL_4V6S_109 | tRNA anticodon loop | ||
| HL_4V6S_105 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6S_001 | Major groove intercalation | ||
| IL_4V6S_002 | No text annotation | ||
| IL_4V6S_003 | Minor groove platform | ||
| IL_4V6S_004 | Symmetric double minor groove platform | ||
| IL_4V6S_005 | Bacterial 5S Loop E | ||
| IL_4V6S_006 | No text annotation | ||
| IL_4V6S_007 | Single bulged A | ||
| IL_4V6S_008 | Minor groove platform | ||
| IL_4V6S_009 | No text annotation | ||
| IL_4V6S_010 | Single stack bend | ||
| IL_4V6S_173 | No text annotation | ||
| IL_4V6S_011 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6S_012 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V6S_013 | No text annotation | ||
| IL_4V6S_014 | No text annotation | ||
| IL_4V6S_174 | No text annotation | ||
| IL_4V6S_015 | No text annotation | ||
| IL_4V6S_016 | No text annotation | ||
| IL_4V6S_017 | Double sheared | ||
| IL_4V6S_210 | Isolated non-canonical cWW pair | ||
| IL_4V6S_018 | AAA cross-strand stack | ||
| IL_4V6S_019 | No text annotation | ||
| IL_4V6S_020 | tHW-tHW cross-strand stack | ||
| IL_4V6S_175 | Isolated near basepair | ||
| IL_4V6S_021 | Single bulged A | ||
| IL_4V6S_022 | Triple sheared related | ||
| IL_4V6S_023 | Major groove platform | ||
| IL_4V6S_024 | Multiple bulged bases | ||
| IL_4V6S_025 | Single base bend | ||
| IL_4V6S_026 | No text annotation | ||
| IL_4V6S_027 | No text annotation | ||
| IL_4V6S_211 | Single stack bend | ||
| IL_4V6S_028 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6S_029 | Minor groove platform | ||
| IL_4V6S_030 | C-loop with bulged stacked A's | ||
| IL_4V6S_031 | Isolated non-canonical cWW pair | ||
| IL_4V6S_176 | No text annotation | ||
| IL_4V6S_032 | No text annotation | ||
| IL_4V6S_033 | No text annotation | ||
| IL_4V6S_034 | No text annotation | ||
| IL_4V6S_035 | Tandem non-canonical cWW pairs | ||
| IL_4V6S_212 | Single bulged C | ||
| IL_4V6S_036 | UAA/GAN | ||
| IL_4V6S_037 | Tandem non-canonical cWW pairs | ||
| IL_4V6S_213 | SSU/LSU pseudoknot | ||
| IL_4V6S_038 | Single bulged U | ||
| IL_4V6S_039 | Kink-turn related | ||
| IL_4V6S_040 | No text annotation | ||
| IL_4V6S_041 | Isolated non-canonical cWW pair | ||
| IL_4V6S_042 | Tandem non-canonical cWW pairs | ||
| IL_4V6S_043 | Kink-turn | ||
| IL_4V6S_044 | No text annotation | ||
| IL_4V6S_045 | Major groove platform | ||
| IL_4V6S_214 | No text annotation | ||
| IL_4V6S_046 | Tandem non-canonical cWW pairs | ||
| IL_4V6S_047 | No text annotation | ||
| IL_4V6S_048 | Kink-turn | ||
| IL_4V6S_049 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6S_177 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4V6S_050 | Major groove platform; stack outside cWW | ||
| IL_4V6S_215 | No text annotation | ||
| IL_4V6S_051 | No text annotation | ||
| IL_4V6S_178 | UAA/GAN | ||
| IL_4V6S_052 | tSH-tHW-tHS | ||
| IL_4V6S_053 | No text annotation | ||
| IL_4V6S_216 | No text annotation | ||
| IL_4V6S_054 | UAA/GAN | ||
| IL_4V6S_217 | No text annotation | ||
| IL_4V6S_179 | No text annotation | ||
| IL_4V6S_055 | Tandem non-canonical cWW pairs | ||
| IL_4V6S_056 | tSH-tHW | ||
| IL_4V6S_057 | No text annotation | ||
| IL_4V6S_058 | tSH-tHW-tHS | ||
| IL_4V6S_059 | No text annotation | ||
| IL_4V6S_180 | No text annotation | ||
| IL_4V6S_060 | Single bulged A | ||
| IL_4V6S_061 | UAA/GAN variation | ||
| IL_4V6S_062 | No text annotation | ||
| IL_4V6S_063 | Isolated tWW turn | ||
| IL_4V6S_064 | Major groove platform; stack outside cWW | ||
| IL_4V6S_181 | No text annotation | ||
| IL_4V6S_065 | Intercalated tWH | ||
| IL_4V6S_066 | tSH-tSH-tHH-tHS | ||
| IL_4V6S_067 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6S_218 | Triple sheared | ||
| IL_4V6S_068 | No text annotation | ||
| IL_4V6S_069 | Single bulged C | ||
| IL_4V6S_070 | Single bulged A | ||
| IL_4V6S_071 | Kink-turn related | ||
| IL_4V6S_072 | No text annotation | ||
| IL_4V6S_182 | No text annotation | ||
| IL_4V6S_183 | Isolated non-canonical cWW pair | ||
| IL_4V6S_073 | Major groove intercalation | ||
| IL_4V6S_184 | No text annotation | ||
| IL_4V6S_074 | No text annotation | ||
| IL_4V6S_075 | UAA/GAN related | ||
| IL_4V6S_076 | Multiple bulged bases | ||
| IL_4V6S_077 | No text annotation | ||
| IL_4V6S_078 | Major groove platform | ||
| IL_4V6S_185 | Major groove platform with extra cWW | ||
| IL_4V6S_079 | No text annotation | ||
| IL_4V6S_080 | No text annotation | ||
| IL_4V6S_186 | Single bulged U | ||
| IL_4V6S_081 | No text annotation | ||
| IL_4V6S_187 | No text annotation | ||
| IL_4V6S_082 | Isolated tHS basepair with bulges | ||
| IL_4V6S_083 | Tandem non-canonical cWW pairs | ||
| IL_4V6S_188 | Isolated non-canonical cWW pair | ||
| IL_4V6S_084 | Isolated non-canonical cWW pair | ||
| IL_4V6S_085 | No text annotation | ||
| IL_4V6S_086 | No text annotation | ||
| IL_4V6S_087 | Other IL | ||
| IL_4V6S_189 | No text annotation | ||
| IL_4V6S_088 | Single bulged G | ||
| IL_4V6S_089 | Double sheared | ||
| IL_4V6S_090 | No text annotation | ||
| IL_4V6S_190 | Major groove platform | ||
| IL_4V6S_091 | No text annotation | ||
| IL_4V6S_191 | No text annotation | ||
| IL_4V6S_092 | Double sheared with non-canonical cWW | ||
| IL_4V6S_093 | No text annotation | ||
| IL_4V6S_192 | No text annotation | ||
| IL_4V6S_094 | Isolated non-canonical cWW with bulges | ||
| IL_4V6S_095 | No text annotation | ||
| IL_4V6S_193 | No text annotation | ||
| IL_4V6S_194 | Isolated near basepair | ||
| IL_4V6S_096 | No text annotation | ||
| IL_4V6S_219 | Single bulged A | ||
| IL_4V6S_097 | Other IL | ||
| IL_4V6S_098 | tSH-tHS-tHW | ||
| IL_4V6S_099 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V6S_220 | Isolated non-canonical cWW pair | ||
| IL_4V6S_195 | Tandem non-canonical cWW pairs | ||
| IL_4V6S_100 | C-loop | ||
| IL_4V6S_101 | UAA/GAN related, with intercalation | ||
| IL_4V6S_102 | Multiple bulged bases | ||
| IL_4V6S_103 | UAA/GAN with extra cWW | ||
| IL_4V6S_104 | No text annotation | ||
| IL_4V6S_221 | No text annotation | ||
| IL_4V6S_196 | Tandem non-canonical cWW pairs | ||
| IL_4V6S_105 | Single bulged C | ||
| IL_4V6S_106 | No text annotation | ||
| IL_4V6S_107 | No text annotation | ||
| IL_4V6S_108 | No text annotation | ||
| IL_4V6S_222 | Isolated non-canonical cWW pair | ||
| IL_4V6S_109 | Isolated non-canonical cWW pair | ||
| IL_4V6S_223 | Single bulged A | ||
| IL_4V6S_110 | No text annotation | ||
| IL_4V6S_111 | Minor groove platform | ||
| IL_4V6S_112 | Multiple bulged bases | ||
| IL_4V6S_113 | Minor groove platform with extra cWW | ||
| IL_4V6S_114 | Minor groove platform | ||
| IL_4V6S_115 | Single bulged G, near cWW | ||
| IL_4V6S_116 | Isolated non-canonical cWW pair | ||
| IL_4V6S_117 | No text annotation | ||
| IL_4V6S_197 | Isolated non-canonical cWW pair | ||
| IL_4V6S_118 | Isolated cWH basepair | ||
| IL_4V6S_119 | tWH-tWH-tHW-tHW | ||
| IL_4V6S_120 | No text annotation | ||
| IL_4V6S_198 | No text annotation | ||
| IL_4V6S_121 | Kink-turn with non-sequential stacking | ||
| IL_4V6S_224 | No text annotation | ||
| IL_4V6S_199 | No text annotation | ||
| IL_4V6S_122 | No text annotation | ||
| IL_4V6S_200 | No text annotation | ||
| IL_4V6S_123 | No text annotation | ||
| IL_4V6S_124 | Single bulged U | ||
| IL_4V6S_125 | C-loop with extra cWW pair | ||
| IL_4V6S_126 | No text annotation | ||
| IL_4V6S_201 | No text annotation | ||
| IL_4V6S_127 | No text annotation | ||
| IL_4V6S_128 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6S_129 | No text annotation | ||
| IL_4V6S_130 | No text annotation | ||
| IL_4V6S_225 | No text annotation | ||
| IL_4V6S_131 | Single stack bend | ||
| IL_4V6S_132 | SSU/LSU pseudoknot | ||
| IL_4V6S_133 | Kink-turn related | ||
| IL_4V6S_134 | No text annotation | ||
| IL_4V6S_135 | tSH-tHW-tHS | ||
| IL_4V6S_136 | Major groove platform | ||
| IL_4V6S_137 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6S_138 | No text annotation | ||
| IL_4V6S_139 | Major groove platform; stack outside cWW | ||
| IL_4V6S_140 | Single stack bend | ||
| IL_4V6S_141 | Tandem non-canonical cWW pairs | ||
| IL_4V6S_142 | No text annotation | ||
| IL_4V6S_143 | Kink-turn | ||
| IL_4V6S_144 | Isolated non-canonical cWW pair | ||
| IL_4V6S_145 | Left turn | ||
| IL_4V6S_146 | tSH-tHW-tHS | ||
| IL_4V6S_202 | Isolated non-canonical cWW pair | ||
| IL_4V6S_203 | Isolated non-canonical cWW pair | ||
| IL_4V6S_147 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V6S_204 | Single bulged A | ||
| IL_4V6S_148 | Isolated non-canonical cWW with bulges | ||
| IL_4V6S_149 | Single bulged G | ||
| IL_4V6S_150 | Minor groove platform | ||
| IL_4V6S_205 | Minor groove platform | ||
| IL_4V6S_151 | Other IL | ||
| IL_4V6S_152 | Minor groove platform | ||
| IL_4V6S_153 | Single stack bend | ||
| IL_4V6S_206 | Isolated non-canonical cWW pair | ||
| IL_4V6S_154 | No text annotation | ||
| IL_4V6S_207 | No text annotation | ||
| IL_4V6S_155 | Minor groove platform | ||
| IL_4V6S_156 | Single bulged A | ||
| IL_4V6S_157 | Isolated non-canonical cWW pair | ||
| IL_4V6S_158 | No text annotation | ||
| IL_4V6S_159 | Minor groove platform | ||
| IL_4V6S_160 | No text annotation | ||
| IL_4V6S_161 | No text annotation | ||
| IL_4V6S_162 | 180 degree turn | ||
| IL_4V6S_163 | Double sheared with non-canonical cWW | ||
| IL_4V6S_164 | No text annotation | ||
| IL_4V6S_165 | No text annotation | ||
| IL_4V6S_208 | No text annotation | ||
| IL_4V6S_166 | No text annotation | ||
| IL_4V6S_167 | No text annotation | ||
| IL_4V6S_226 | Tandem non-canonical cWW pairs | ||
| IL_4V6S_168 | No text annotation | ||
| IL_4V6S_169 | No text annotation | ||
| IL_4V6S_209 | No text annotation | ||
| IL_4V6S_170 | Triple sheared related | ||
| IL_4V6S_171 | No text annotation | ||
| IL_4V6S_227 | No text annotation | ||
| IL_4V6S_172 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6S_001 | No text annotation | ||
| J3_4V6S_002 | No text annotation | ||
| J3_4V6S_025 | No text annotation | ||
| J3_4V6S_026 | No text annotation | ||
| J3_4V6S_027 | No text annotation | ||
| J3_4V6S_003 | No text annotation | ||
| J3_4V6S_004 | No text annotation | ||
| J3_4V6S_005 | No text annotation | ||
| J3_4V6S_037 | No text annotation | ||
| J3_4V6S_006 | No text annotation | ||
| J3_4V6S_007 | No text annotation | ||
| J3_4V6S_008 | No text annotation | ||
| J3_4V6S_028 | No text annotation | ||
| J3_4V6S_009 | Kink-turn 3-way junction | ||
| J3_4V6S_010 | No text annotation | ||
| J3_4V6S_029 | No text annotation | ||
| J3_4V6S_038 | No text annotation | ||
| J3_4V6S_011 | No text annotation | ||
| J3_4V6S_012 | No text annotation | ||
| J3_4V6S_013 | No text annotation | ||
| J3_4V6S_030 | No text annotation | ||
| J3_4V6S_031 | No text annotation | ||
| J3_4V6S_014 | No text annotation | ||
| J3_4V6S_032 | No text annotation | ||
| J3_4V6S_015 | No text annotation | ||
| J3_4V6S_016 | No text annotation | ||
| J3_4V6S_033 | No text annotation | ||
| J3_4V6S_017 | No text annotation | ||
| J3_4V6S_034 | No text annotation | ||
| J3_4V6S_018 | No text annotation | ||
| J3_4V6S_019 | No text annotation | ||
| J3_4V6S_035 | No text annotation | ||
| J3_4V6S_020 | No text annotation | ||
| J3_4V6S_039 | No text annotation | ||
| J3_4V6S_021 | No text annotation | ||
| J3_4V6S_022 | No text annotation | ||
| J3_4V6S_023 | No text annotation | ||
| J3_4V6S_036 | No text annotation | ||
| J3_4V6S_040 | No text annotation | ||
| J3_4V6S_024 | No text annotation | ||
| J4_4V6S_016 | No text annotation | ||
| J4_4V6S_001 | No text annotation | ||
| J4_4V6S_002 | No text annotation | ||
| J4_4V6S_003 | No text annotation | ||
| J4_4V6S_004 | No text annotation | ||
| J4_4V6S_005 | No text annotation | ||
| J4_4V6S_006 | No text annotation | ||
| J4_4V6S_007 | No text annotation | ||
| J4_4V6S_017 | No text annotation | ||
| J4_4V6S_008 | No text annotation | ||
| J4_4V6S_009 | No text annotation | ||
| J4_4V6S_010 | No text annotation | ||
| J4_4V6S_011 | No text annotation | ||
| J4_4V6S_018 | No text annotation | ||
| J4_4V6S_012 | No text annotation | ||
| J4_4V6S_013 | No text annotation | ||
| J4_4V6S_014 | No text annotation | ||
| J4_4V6S_015 | tRNA junction | ||
| J5_4V6S_001 | No text annotation | ||
| J5_4V6S_010 | No text annotation | ||
| J5_4V6S_002 | No text annotation | ||
| J5_4V6S_003 | No text annotation | ||
| J5_4V6S_004 | No text annotation | ||
| J5_4V6S_005 | No text annotation | ||
| J5_4V6S_011 | No text annotation | ||
| J5_4V6S_006 | No text annotation | ||
| J5_4V6S_007 | No text annotation | ||
| J5_4V6S_008 | No text annotation | ||
| J5_4V6S_009 | No text annotation | ||
| J6_4V6S_001 | No text annotation | ||
| J7_4V6S_003 | No text annotation | ||
| J7_4V6S_001 | No text annotation | ||
| J7_4V6S_004 | No text annotation | ||
| J7_4V6S_002 | No text annotation |
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