HL_4V6S_017

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_017 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.2882

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V6S|1|AB|C|487
4V6S|1|AB|G|488
4V6S|1|AB|G|489
4V6S|1|AB|C|490
4V6S|1|AB|G|491
4V6S|1|AB|A|492
4V6S|1|AB|G|493

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L22