HL_4V6S_031

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_031 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3631

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V6S|1|AB|C|1092
4V6S|1|AB|G|1093
4V6S|1|AB|U|1094
4V6S|1|AB|A|1095
4V6S|1|AB|A|1096
4V6S|1|AB|U|1097
4V6S|1|AB|A|1098
4V6S|1|AB|G|1099

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L36

Chain AH

50S ribosomal protein L6

Chain AK

50S ribosomal protein L11