HL_4V6S_043

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V6S|1|AB|U|1693

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_043 not in the Motif Atlas

Geometric match to HL_1KUQ_001

Geometric discrepancy: 0.2244

The information below is about HL_1KUQ_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

4V6S|1|AB|C|1691
4V6S|1|AB|U|1692
4V6S|1|AB|U|1693
4V6S|1|AB|C|1694
4V6S|1|AB|G|1695
4V6S|1|AB|G|1696

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA