HL_4V6S_069

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

4V6S|1|AB|A|2820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_069 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.2018

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V6S|1|AB|G|2819
4V6S|1|AB|A|2820
4V6S|1|AB|A|2821
4V6S|1|AB|G|2822
4V6S|1|AB|A|2823
4V6S|1|AB|C|2824
4V6S|1|AB|G|2825
4V6S|1|AB|A|2826
4V6S|1|AB|C|2827

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3

Chain AP

50S ribosomal protein L17