HL_4V6S_079

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V6S|1|BA|A|344

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_079 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.4746

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

4V6S|1|BA|C|342
4V6S|1|BA|U|343
4V6S|1|BA|A|344
4V6S|1|BA|C|345
4V6S|1|BA|G|346
4V6S|1|BA|G|347

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AM

50S ribosomal protein L14

Chain AR

50S ribosomal protein L19