HL_4V6S_088

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

4V6S|1|BA|U|842, 4V6S|1|BA|A|845

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_088 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3527

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V6S|1|BA|C|839
4V6S|1|BA|C|840
4V6S|1|BA|C|841
4V6S|1|BA|U|842
4V6S|1|BA|U|843
4V6S|1|BA|G|844
4V6S|1|BA|A|845
4V6S|1|BA|G|846
4V6S|1|BA|G|847

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

mRNA

Chain BD

30S ribosomal protein S2

Chain BT

30S ribosomal protein S18