HL_4V6S_096

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

4V6S|1|BA|C|1136, 4V6S|1|BA|G|1139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6S_096 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.5774

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4V6S|1|BA|G|1134
4V6S|1|BA|U|1135
4V6S|1|BA|C|1136
4V6S|1|BA|C|1137
4V6S|1|BA|G|1138
4V6S|1|BA|G|1139
4V6S|1|BA|C|1140

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

30S ribosomal protein S3

Chain BK

30S ribosomal protein S9

Chain BL

30S ribosomal protein S10