HL_4V6S_107

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GUGCAAUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|AB|G|2323
4V6S|1|AB|U|2324
4V6S|1|AB|G|2325
4V6S|1|AB|C|2326
4V6S|1|AB|A|2327
4V6S|1|AB|A|2328
4V6S|1|AB|U|2329
4V6S|1|AB|G|2330
4V6S|1|AB|G|2331
4V6S|1|AB|C|2332

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AG

50S ribosomal protein L5

Chain AY

50S ribosomal protein L27

Chain BC

Transfer RNA; tRNA