HL_4V6S_114

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

U(1MG)(PSU)(5MU)GAAAAA

Length

10 nucleotides

Bulged bases

4V6S|1|AB|5MU|747, 4V6S|1|AB|A|751

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|AB|U|744
4V6S|1|AB|1MG|745
4V6S|1|AB|PSU|746
4V6S|1|AB|5MU|747
4V6S|1|AB|G|748
4V6S|1|AB|A|749
4V6S|1|AB|A|750
4V6S|1|AB|A|751
4V6S|1|AB|A|752
4V6S|1|AB|A|753

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L32

Chain A5

50S ribosomal protein L34

Chain AE

50S ribosomal protein L3

Chain AU

50S ribosomal protein L22