3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
4V6T|1|BA|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6T_058 not in the Motif Atlas
Homologous match to HL_5J7L_150
Geometric discrepancy: 0.0613
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

4V6T|1|BA|U|566
4V6T|1|BA|U|567
4V6T|1|BA|U|568
4V6T|1|BA|U|569
4V6T|1|BA|G|570
4V6T|1|BA|U|571
4V6T|1|BA|A|572
4V6T|1|BA|U|573
4V6T|1|BA|A|574
4V6T|1|BA|A|575

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain BD
50S ribosomal protein L3
Chain BL
50S ribosomal protein L15
Chain BQ
50S ribosomal protein L20
Chain BR
50S ribosomal protein L21

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