4V6T Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6T_001 | No text annotation | ||
| HL_4V6T_002 | No text annotation | ||
| HL_4V6T_113 | No text annotation | ||
| HL_4V6T_003 | GNRA | ||
| HL_4V6T_004 | GNRA | ||
| HL_4V6T_005 | UNCG | ||
| HL_4V6T_006 | GNRA related | ||
| HL_4V6T_007 | GNRA | ||
| HL_4V6T_008 | No text annotation | ||
| HL_4V6T_009 | UNCG | ||
| HL_4V6T_010 | GNRA | ||
| HL_4V6T_011 | UNCG | ||
| HL_4V6T_012 | GNRA wlth extra near cWW | ||
| HL_4V6T_013 | No text annotation | ||
| HL_4V6T_014 | GNRA-like with tWH | ||
| HL_4V6T_015 | No text annotation | ||
| HL_4V6T_016 | GNRA | ||
| HL_4V6T_017 | No text annotation | ||
| HL_4V6T_018 | No text annotation | ||
| HL_4V6T_019 | GNRA | ||
| HL_4V6T_020 | GNRA | ||
| HL_4V6T_021 | No text annotation | ||
| HL_4V6T_022 | GNRA | ||
| HL_4V6T_023 | No text annotation | ||
| HL_4V6T_024 | GNRA | ||
| HL_4V6T_025 | T-loop related | ||
| HL_4V6T_114 | No text annotation | ||
| HL_4V6T_026 | No text annotation | ||
| HL_4V6T_027 | GNRA | ||
| HL_4V6T_028 | GNRA | ||
| HL_4V6T_115 | No text annotation | ||
| HL_4V6T_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V6T_030 | No text annotation | ||
| HL_4V6T_031 | UNCG | ||
| HL_4V6T_032 | GNRA | ||
| HL_4V6T_033 | No text annotation | ||
| HL_4V6T_034 | No text annotation | ||
| HL_4V6T_035 | No text annotation | ||
| HL_4V6T_124 | No text annotation | ||
| HL_4V6T_116 | No text annotation | ||
| HL_4V6T_036 | No text annotation | ||
| HL_4V6T_117 | No text annotation | ||
| HL_4V6T_037 | No text annotation | ||
| HL_4V6T_038 | T-loop with 2 stacked bulged bases | ||
| HL_4V6T_039 | tRNA D-loop | ||
| HL_4V6T_040 | tRNA anticodon loop | ||
| HL_4V6T_041 | No text annotation | ||
| HL_4V6T_118 | No text annotation | ||
| HL_4V6T_042 | No text annotation | ||
| HL_4V6T_043 | No text annotation | ||
| HL_4V6T_044 | No text annotation | ||
| HL_4V6T_045 | No text annotation | ||
| HL_4V6T_046 | No text annotation | ||
| HL_4V6T_047 | No text annotation | ||
| HL_4V6T_048 | No text annotation | ||
| HL_4V6T_049 | No text annotation | ||
| HL_4V6T_050 | T-loop with 2 stacked bulged bases | ||
| HL_4V6T_051 | No text annotation | ||
| HL_4V6T_052 | T-loop with unstacked turn | ||
| HL_4V6T_053 | No text annotation | ||
| HL_4V6T_054 | Pseudoknot geometry | ||
| HL_4V6T_055 | GNRA | ||
| HL_4V6T_056 | GNRA | ||
| HL_4V6T_057 | No text annotation | ||
| HL_4V6T_058 | T-loop with 2 stacked bulged bases | ||
| HL_4V6T_059 | No text annotation | ||
| HL_4V6T_060 | GNRA | ||
| HL_4V6T_061 | No text annotation | ||
| HL_4V6T_062 | GNRA wlth tandem sheared | ||
| HL_4V6T_063 | No text annotation | ||
| HL_4V6T_064 | UNCG variation | ||
| HL_4V6T_065 | No text annotation | ||
| HL_4V6T_066 | No text annotation | ||
| HL_4V6T_067 | GNRA | ||
| HL_4V6T_068 | No text annotation | ||
| HL_4V6T_119 | No text annotation | ||
| HL_4V6T_069 | No text annotation | ||
| HL_4V6T_120 | No text annotation | ||
| HL_4V6T_070 | No text annotation | ||
| HL_4V6T_071 | No text annotation | ||
| HL_4V6T_121 | No text annotation | ||
| HL_4V6T_072 | GNRA | ||
| HL_4V6T_073 | T-loop with 2 stacked bulged bases | ||
| HL_4V6T_074 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6T_075 | GNRA | ||
| HL_4V6T_076 | No text annotation | ||
| HL_4V6T_077 | Mini UNCG with extended bulge | ||
| HL_4V6T_078 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6T_079 | UNCG | ||
| HL_4V6T_080 | Mini UNCG | ||
| HL_4V6T_081 | No text annotation | ||
| HL_4V6T_082 | GNRA | ||
| HL_4V6T_083 | UNCG | ||
| HL_4V6T_122 | No text annotation | ||
| HL_4V6T_084 | No text annotation | ||
| HL_4V6T_085 | No text annotation | ||
| HL_4V6T_086 | No text annotation | ||
| HL_4V6T_087 | GNRA related | ||
| HL_4V6T_088 | GNRA variation | ||
| HL_4V6T_089 | No text annotation | ||
| HL_4V6T_090 | No text annotation | ||
| HL_4V6T_091 | No text annotation | ||
| HL_4V6T_092 | No text annotation | ||
| HL_4V6T_093 | No text annotation | ||
| HL_4V6T_094 | No text annotation | ||
| HL_4V6T_095 | No text annotation | ||
| HL_4V6T_096 | tRNA D-loop | ||
| HL_4V6T_125 | No text annotation | ||
| HL_4V6T_097 | Pseudoknot geometry | ||
| HL_4V6T_098 | GNRA | ||
| HL_4V6T_099 | GNRA | ||
| HL_4V6T_100 | No text annotation | ||
| HL_4V6T_101 | No text annotation | ||
| HL_4V6T_102 | GNRA variation | ||
| HL_4V6T_103 | No text annotation | ||
| HL_4V6T_104 | GNRA | ||
| HL_4V6T_105 | GNRA | ||
| HL_4V6T_106 | Ribsomal LSU H95 | ||
| HL_4V6T_107 | No text annotation | ||
| HL_4V6T_108 | No text annotation | ||
| HL_4V6T_109 | No text annotation | ||
| HL_4V6T_110 | GNRA | ||
| HL_4V6T_123 | No text annotation | ||
| HL_4V6T_111 | No text annotation | ||
| HL_4V6T_112 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6T_001 | Isolated non-canonical cWW pair | ||
| IL_4V6T_205 | Single bulged G | ||
| IL_4V6T_002 | Single bulged A | ||
| IL_4V6T_003 | No text annotation | ||
| IL_4V6T_004 | Minor groove platform | ||
| IL_4V6T_005 | Multiple bulged bases | ||
| IL_4V6T_006 | Minor groove platform with extra cWW | ||
| IL_4V6T_007 | Minor groove platform | ||
| IL_4V6T_008 | Major groove intercalation | ||
| IL_4V6T_009 | Isolated non-canonical cWW pair | ||
| IL_4V6T_010 | Minor groove platform related | ||
| IL_4V6T_011 | Isolated cWH basepair | ||
| IL_4V6T_206 | tWH-tWH-tHW-tHW | ||
| IL_4V6T_012 | No text annotation | ||
| IL_4V6T_186 | No text annotation | ||
| IL_4V6T_013 | No text annotation | ||
| IL_4V6T_014 | Kink-turn with non-sequential stacking | ||
| IL_4V6T_015 | No text annotation | ||
| IL_4V6T_016 | C-loop | ||
| IL_4V6T_017 | Single bulged U | ||
| IL_4V6T_018 | C-loop | ||
| IL_4V6T_019 | Single bulged G | ||
| IL_4V6T_020 | No text annotation | ||
| IL_4V6T_021 | No text annotation | ||
| IL_4V6T_022 | tSH-tHW-tWW | ||
| IL_4V6T_023 | No text annotation | ||
| IL_4V6T_024 | SSU/LSU pseudoknot | ||
| IL_4V6T_025 | Kink-turn related | ||
| IL_4V6T_026 | No text annotation | ||
| IL_4V6T_027 | tSH-tHW-tHS | ||
| IL_4V6T_028 | Major groove platform | ||
| IL_4V6T_029 | Major groove minor groove platform with extra cWW | ||
| IL_4V6T_207 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6T_030 | No text annotation | ||
| IL_4V6T_031 | Major groove platform; stack outside cWW | ||
| IL_4V6T_208 | Single stack bend | ||
| IL_4V6T_032 | No text annotation | ||
| IL_4V6T_033 | Tandem non-canonical cWW pairs | ||
| IL_4V6T_209 | Triple non-canonical cWW pairs | ||
| IL_4V6T_034 | Kink-turn | ||
| IL_4V6T_035 | Left turn | ||
| IL_4V6T_036 | tSH-tHW-tHS | ||
| IL_4V6T_037 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V6T_210 | Minor groove platform | ||
| IL_4V6T_038 | No text annotation | ||
| IL_4V6T_039 | Minor groove platform | ||
| IL_4V6T_211 | Minor groove platform | ||
| IL_4V6T_040 | No text annotation | ||
| IL_4V6T_041 | Single stack bend | ||
| IL_4V6T_187 | No text annotation | ||
| IL_4V6T_042 | Single bulged U | ||
| IL_4V6T_043 | Isolated cWS basepair | ||
| IL_4V6T_044 | Minor groove platform | ||
| IL_4V6T_045 | Single bulged A | ||
| IL_4V6T_046 | Isolated non-canonical cWW pair | ||
| IL_4V6T_047 | No text annotation | ||
| IL_4V6T_048 | Minor groove platform | ||
| IL_4V6T_049 | No text annotation | ||
| IL_4V6T_050 | No text annotation | ||
| IL_4V6T_051 | 180 degree turn | ||
| IL_4V6T_052 | Double sheared with non-canonical cWW | ||
| IL_4V6T_053 | No text annotation | ||
| IL_4V6T_054 | No text annotation | ||
| IL_4V6T_055 | No text annotation | ||
| IL_4V6T_056 | Isolated non-canonical cWW pair | ||
| IL_4V6T_057 | Isolated non-canonical cWW pair | ||
| IL_4V6T_212 | Isolated non-canonical cWW pair | ||
| IL_4V6T_058 | Tandem non-canonical cWW pairs | ||
| IL_4V6T_188 | Partly complementary | ||
| IL_4V6T_059 | Double sheared | ||
| IL_4V6T_060 | Triple sheared related | ||
| IL_4V6T_061 | Single bulged A | ||
| IL_4V6T_062 | No text annotation | ||
| IL_4V6T_063 | No text annotation | ||
| IL_4V6T_213 | No text annotation | ||
| IL_4V6T_064 | No text annotation | ||
| IL_4V6T_189 | No text annotation | ||
| IL_4V6T_065 | No text annotation | ||
| IL_4V6T_214 | No text annotation | ||
| IL_4V6T_066 | Tandem non-canonical cWW pairs | ||
| IL_4V6T_190 | No text annotation | ||
| IL_4V6T_215 | Single bulged U | ||
| IL_4V6T_067 | No text annotation | ||
| IL_4V6T_068 | No text annotation | ||
| IL_4V6T_191 | No text annotation | ||
| IL_4V6T_192 | No text annotation | ||
| IL_4V6T_216 | No text annotation | ||
| IL_4V6T_069 | No text annotation | ||
| IL_4V6T_193 | No text annotation | ||
| IL_4V6T_070 | No text annotation | ||
| IL_4V6T_217 | No text annotation | ||
| IL_4V6T_071 | Triple sheared with non-canonical cWW | ||
| IL_4V6T_072 | Single bulged A | ||
| IL_4V6T_073 | Minor groove platform | ||
| IL_4V6T_074 | No text annotation | ||
| IL_4V6T_075 | Single stack bend | ||
| IL_4V6T_076 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6T_077 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V6T_078 | No text annotation | ||
| IL_4V6T_079 | No text annotation | ||
| IL_4V6T_194 | No text annotation | ||
| IL_4V6T_080 | No text annotation | ||
| IL_4V6T_081 | No text annotation | ||
| IL_4V6T_082 | Double sheared | ||
| IL_4V6T_083 | Isolated non-canonical cWW pair | ||
| IL_4V6T_084 | AAA cross-strand stack | ||
| IL_4V6T_085 | Isolated non-canonical cWW pair | ||
| IL_4V6T_086 | tHW-tHW cross-strand stack | ||
| IL_4V6T_087 | Single bulged A | ||
| IL_4V6T_088 | Single bulged G | ||
| IL_4V6T_218 | Triple sheared | ||
| IL_4V6T_195 | Triple sheared with non-canonical cWW | ||
| IL_4V6T_089 | No text annotation | ||
| IL_4V6T_090 | Major groove platform | ||
| IL_4V6T_091 | Multiple bulged bases | ||
| IL_4V6T_092 | Single stack bend | ||
| IL_4V6T_093 | 90 degree turn | ||
| IL_4V6T_196 | No text annotation | ||
| IL_4V6T_094 | Stack outside cWW | ||
| IL_4V6T_095 | Single stack bend | ||
| IL_4V6T_096 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6T_097 | Single bulged G | ||
| IL_4V6T_098 | No text annotation | ||
| IL_4V6T_197 | No text annotation | ||
| IL_4V6T_099 | Isolated non-canonical cWW pair | ||
| IL_4V6T_219 | No text annotation | ||
| IL_4V6T_198 | No text annotation | ||
| IL_4V6T_100 | No text annotation | ||
| IL_4V6T_101 | Single bulged C | ||
| IL_4V6T_102 | UAA/GAN | ||
| IL_4V6T_103 | SSU/LSU pseudoknot | ||
| IL_4V6T_104 | Single bulged U | ||
| IL_4V6T_105 | Kink-turn related | ||
| IL_4V6T_106 | No text annotation | ||
| IL_4V6T_107 | Isolated non-canonical cWW pair | ||
| IL_4V6T_108 | Tandem non-canonical cWW pairs | ||
| IL_4V6T_109 | Kink-turn | ||
| IL_4V6T_110 | No text annotation | ||
| IL_4V6T_111 | No text annotation | ||
| IL_4V6T_112 | Isolated cWS basepair | ||
| IL_4V6T_113 | No text annotation | ||
| IL_4V6T_114 | Kink-turn | ||
| IL_4V6T_115 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6T_116 | Major groove platform; stack outside cWW | ||
| IL_4V6T_117 | C-loop | ||
| IL_4V6T_220 | Single stack bend with SAM intercalation | ||
| IL_4V6T_118 | UAA/GAN | ||
| IL_4V6T_221 | No text annotation | ||
| IL_4V6T_119 | tSH-tHW-tHS | ||
| IL_4V6T_120 | No text annotation | ||
| IL_4V6T_121 | UAA/GAN | ||
| IL_4V6T_122 | Tandem non-canonical cWW pairs | ||
| IL_4V6T_123 | tSH-tHW | ||
| IL_4V6T_124 | Single bulged U | ||
| IL_4V6T_125 | No text annotation | ||
| IL_4V6T_199 | tSH-tHW-tHS | ||
| IL_4V6T_126 | No text annotation | ||
| IL_4V6T_127 | 180 degree turn | ||
| IL_4V6T_128 | Single bulged A | ||
| IL_4V6T_129 | UAA/GAN variation | ||
| IL_4V6T_130 | No text annotation | ||
| IL_4V6T_131 | Isolated tWW turn | ||
| IL_4V6T_132 | Major groove platform; stack outside cWW | ||
| IL_4V6T_200 | No text annotation | ||
| IL_4V6T_133 | Intercalated tWH | ||
| IL_4V6T_134 | tSH-tSH-tHH-tHS | ||
| IL_4V6T_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6T_136 | Triple sheared | ||
| IL_4V6T_137 | Single bulged C | ||
| IL_4V6T_138 | Single bulged A | ||
| IL_4V6T_139 | Kink-turn related | ||
| IL_4V6T_140 | Minor groove platform, major groove intercalation | ||
| IL_4V6T_222 | Major groove intercalation | ||
| IL_4V6T_141 | Isolated non-canonical cWW with bulges | ||
| IL_4V6T_142 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6T_201 | No text annotation | ||
| IL_4V6T_143 | UAA/GAN related | ||
| IL_4V6T_144 | Bulged stacked bases | ||
| IL_4V6T_145 | No text annotation | ||
| IL_4V6T_146 | Major groove platform | ||
| IL_4V6T_147 | No text annotation | ||
| IL_4V6T_148 | Single bulged U | ||
| IL_4V6T_149 | Minor groove platform | ||
| IL_4V6T_150 | Isolated tHS basepair with bulges | ||
| IL_4V6T_151 | Isolated non-canonical cWW pair | ||
| IL_4V6T_202 | Isolated non-canonical cWW pair | ||
| IL_4V6T_152 | Other IL | ||
| IL_4V6T_153 | Isolated non-canonical cWW pair | ||
| IL_4V6T_223 | No text annotation | ||
| IL_4V6T_154 | No text annotation | ||
| IL_4V6T_203 | No text annotation | ||
| IL_4V6T_224 | No text annotation | ||
| IL_4V6T_155 | Kink-turn related | ||
| IL_4V6T_225 | Kink-turn | ||
| IL_4V6T_204 | No text annotation | ||
| IL_4V6T_156 | No text annotation | ||
| IL_4V6T_157 | Single bulged U | ||
| IL_4V6T_158 | Double sheared | ||
| IL_4V6T_159 | No text annotation | ||
| IL_4V6T_160 | Single stack bend | ||
| IL_4V6T_161 | Major groove platform | ||
| IL_4V6T_162 | Major groove platform | ||
| IL_4V6T_163 | Major groove minor groove platform with extra cWW | ||
| IL_4V6T_164 | Double sheared with non-canonical cWW | ||
| IL_4V6T_165 | Major groove platform | ||
| IL_4V6T_166 | Isolated non-canonical cWW with bulges | ||
| IL_4V6T_167 | No text annotation | ||
| IL_4V6T_168 | Major groove platform with intercalation | ||
| IL_4V6T_169 | Single bulged A | ||
| IL_4V6T_170 | tSH-tHS-tHW | ||
| IL_4V6T_171 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V6T_172 | C-loop | ||
| IL_4V6T_173 | UAA/GAN related, with intercalation | ||
| IL_4V6T_174 | Multiple bulged bases | ||
| IL_4V6T_175 | UAA/GAN with extra cWW | ||
| IL_4V6T_176 | Single bulged A | ||
| IL_4V6T_177 | No text annotation | ||
| IL_4V6T_178 | Major groove intercalation | ||
| IL_4V6T_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V6T_180 | tHS double platform | ||
| IL_4V6T_181 | Major groove intercalation | ||
| IL_4V6T_182 | No text annotation | ||
| IL_4V6T_183 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6T_184 | Symmetric double minor groove platform | ||
| IL_4V6T_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6T_001 | No text annotation | ||
| J3_4V6T_026 | No text annotation | ||
| J3_4V6T_002 | No text annotation | ||
| J3_4V6T_027 | No text annotation | ||
| J3_4V6T_042 | No text annotation | ||
| J3_4V6T_028 | No text annotation | ||
| J3_4V6T_003 | No text annotation | ||
| J3_4V6T_029 | No text annotation | ||
| J3_4V6T_004 | No text annotation | ||
| J3_4V6T_043 | No text annotation | ||
| J3_4V6T_030 | No text annotation | ||
| J3_4V6T_031 | No text annotation | ||
| J3_4V6T_005 | No text annotation | ||
| J3_4V6T_006 | No text annotation | ||
| J3_4V6T_044 | No text annotation | ||
| J3_4V6T_032 | No text annotation | ||
| J3_4V6T_007 | No text annotation | ||
| J3_4V6T_008 | No text annotation | ||
| J3_4V6T_033 | No text annotation | ||
| J3_4V6T_009 | No text annotation | ||
| J3_4V6T_010 | No text annotation | ||
| J3_4V6T_034 | No text annotation | ||
| J3_4V6T_011 | No text annotation | ||
| J3_4V6T_035 | No text annotation | ||
| J3_4V6T_045 | No text annotation | ||
| J3_4V6T_012 | No text annotation | ||
| J3_4V6T_036 | No text annotation | ||
| J3_4V6T_037 | No text annotation | ||
| J3_4V6T_013 | No text annotation | ||
| J3_4V6T_038 | No text annotation | ||
| J3_4V6T_014 | No text annotation | ||
| J3_4V6T_015 | No text annotation | ||
| J3_4V6T_016 | No text annotation | ||
| J3_4V6T_039 | No text annotation | ||
| J3_4V6T_017 | No text annotation | ||
| J3_4V6T_018 | No text annotation | ||
| J3_4V6T_019 | No text annotation | ||
| J3_4V6T_040 | No text annotation | ||
| J3_4V6T_020 | Kink-turn 3-way junction | ||
| J3_4V6T_041 | No text annotation | ||
| J3_4V6T_021 | No text annotation | ||
| J3_4V6T_022 | No text annotation | ||
| J3_4V6T_023 | No text annotation | ||
| J3_4V6T_024 | No text annotation | ||
| J3_4V6T_025 | No text annotation | ||
| J4_4V6T_001 | No text annotation | ||
| J4_4V6T_002 | No text annotation | ||
| J4_4V6T_003 | No text annotation | ||
| J4_4V6T_004 | No text annotation | ||
| J4_4V6T_005 | No text annotation | ||
| J4_4V6T_006 | No text annotation | ||
| J4_4V6T_007 | No text annotation | ||
| J4_4V6T_008 | No text annotation | ||
| J4_4V6T_009 | No text annotation | ||
| J4_4V6T_010 | No text annotation | ||
| J4_4V6T_011 | No text annotation | ||
| J4_4V6T_012 | No text annotation | ||
| J4_4V6T_013 | No text annotation | ||
| J4_4V6T_014 | No text annotation | ||
| J4_4V6T_015 | No text annotation | ||
| J5_4V6T_001 | No text annotation | ||
| J5_4V6T_002 | No text annotation | ||
| J5_4V6T_003 | No text annotation | ||
| J5_4V6T_004 | No text annotation | ||
| J5_4V6T_005 | No text annotation | ||
| J5_4V6T_006 | No text annotation | ||
| J5_4V6T_007 | No text annotation | ||
| J5_4V6T_008 | No text annotation | ||
| J5_4V6T_009 | No text annotation | ||
| J6_4V6T_001 | No text annotation | ||
| J6_4V6T_002 | No text annotation | ||
| J7_4V6T_001 | No text annotation | ||
| J7_4V6T_002 | No text annotation |
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