HL_4V6T_064

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

4V6T|1|BA|A|781, 4V6T|1|BA|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6T_064 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.3509

The information below is about HL_2NUE_001

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V6T|1|BA|U|779
4V6T|1|BA|G|780
4V6T|1|BA|A|781
4V6T|1|BA|A|782
4V6T|1|BA|A|783
4V6T|1|BA|G|784
4V6T|1|BA|G|785

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2