HL_4V6T_101

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6T_101 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1601

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6T|1|BA|A|2471
4V6T|1|BA|G|2472
4V6T|1|BA|U|2473
4V6T|1|BA|U|2474
4V6T|1|BA|C|2475
4V6T|1|BA|A|2476
4V6T|1|BA|U|2477
4V6T|1|BA|A|2478
4V6T|1|BA|U|2479

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AY

elongation factor G

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6