HL_4V6V_030

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

4V6V|1|AA|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6V_030 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.4453

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4V6V|1|AA|G|1134
4V6V|1|AA|U|1135
4V6V|1|AA|C|1136
4V6V|1|AA|C|1137
4V6V|1|AA|G|1138
4V6V|1|AA|G|1139
4V6V|1|AA|C|1140

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein S9