4V6V Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6V_001 | No text annotation | ||
| HL_4V6V_002 | No text annotation | ||
| HL_4V6V_003 | tRNA anticodon loop | ||
| HL_4V6V_004 | T-loop with 2 stacked bulged bases | ||
| HL_4V6V_005 | No text annotation | ||
| HL_4V6V_108 | No text annotation | ||
| HL_4V6V_006 | No text annotation | ||
| HL_4V6V_007 | No text annotation | ||
| HL_4V6V_008 | GNRA | ||
| HL_4V6V_009 | UNCG | ||
| HL_4V6V_010 | GNRA related | ||
| HL_4V6V_011 | GNRA | ||
| HL_4V6V_012 | No text annotation | ||
| HL_4V6V_013 | UNCG | ||
| HL_4V6V_014 | GNRA variation | ||
| HL_4V6V_015 | No text annotation | ||
| HL_4V6V_016 | No text annotation | ||
| HL_4V6V_017 | No text annotation | ||
| HL_4V6V_111 | GNRA variation | ||
| HL_4V6V_018 | No text annotation | ||
| HL_4V6V_019 | No text annotation | ||
| HL_4V6V_020 | No text annotation | ||
| HL_4V6V_021 | No text annotation | ||
| HL_4V6V_022 | No text annotation | ||
| HL_4V6V_023 | GNRA | ||
| HL_4V6V_024 | GNRA | ||
| HL_4V6V_025 | No text annotation | ||
| HL_4V6V_026 | GNRA | ||
| HL_4V6V_027 | UNCG | ||
| HL_4V6V_028 | GNRA | ||
| HL_4V6V_029 | T-loop related | ||
| HL_4V6V_030 | No text annotation | ||
| HL_4V6V_031 | GNRA | ||
| HL_4V6V_032 | GNRA | ||
| HL_4V6V_033 | T-loop with 3 stacked bulged bases | ||
| HL_4V6V_034 | No text annotation | ||
| HL_4V6V_035 | UNCG | ||
| HL_4V6V_036 | GNRA | ||
| HL_4V6V_037 | Pseudoknot with intercalation | ||
| HL_4V6V_038 | No text annotation | ||
| HL_4V6V_039 | No text annotation | ||
| HL_4V6V_040 | No text annotation | ||
| HL_4V6V_041 | No text annotation | ||
| HL_4V6V_042 | No text annotation | ||
| HL_4V6V_043 | No text annotation | ||
| HL_4V6V_044 | No text annotation | ||
| HL_4V6V_045 | T-loop with 2 stacked bulged bases | ||
| HL_4V6V_046 | No text annotation | ||
| HL_4V6V_047 | T-loop with unstacked turn | ||
| HL_4V6V_048 | No text annotation | ||
| HL_4V6V_049 | No text annotation | ||
| HL_4V6V_050 | GNRA | ||
| HL_4V6V_051 | GNRA | ||
| HL_4V6V_052 | No text annotation | ||
| HL_4V6V_053 | No text annotation | ||
| HL_4V6V_054 | No text annotation | ||
| HL_4V6V_055 | GNRA | ||
| HL_4V6V_056 | GNRA | ||
| HL_4V6V_057 | No text annotation | ||
| HL_4V6V_058 | No text annotation | ||
| HL_4V6V_059 | GNRA related | ||
| HL_4V6V_060 | No text annotation | ||
| HL_4V6V_061 | No text annotation | ||
| HL_4V6V_062 | No text annotation | ||
| HL_4V6V_109 | GNRA | ||
| HL_4V6V_063 | No text annotation | ||
| HL_4V6V_064 | No text annotation | ||
| HL_4V6V_065 | GNRA wlth tandem sheared | ||
| HL_4V6V_066 | GNRA related | ||
| HL_4V6V_067 | GNRA | ||
| HL_4V6V_068 | T-loop with 2 stacked bulged bases | ||
| HL_4V6V_069 | No text annotation | ||
| HL_4V6V_070 | GNRA | ||
| HL_4V6V_071 | No text annotation | ||
| HL_4V6V_072 | No text annotation | ||
| HL_4V6V_073 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6V_074 | UNCG | ||
| HL_4V6V_075 | No text annotation | ||
| HL_4V6V_076 | No text annotation | ||
| HL_4V6V_077 | GNRA with extra cWW | ||
| HL_4V6V_078 | No text annotation | ||
| HL_4V6V_079 | No text annotation | ||
| HL_4V6V_080 | No text annotation | ||
| HL_4V6V_081 | No text annotation | ||
| HL_4V6V_082 | No text annotation | ||
| HL_4V6V_083 | GNRA variation | ||
| HL_4V6V_084 | No text annotation | ||
| HL_4V6V_085 | No text annotation | ||
| HL_4V6V_086 | No text annotation | ||
| HL_4V6V_087 | No text annotation | ||
| HL_4V6V_088 | No text annotation | ||
| HL_4V6V_089 | No text annotation | ||
| HL_4V6V_090 | No text annotation | ||
| HL_4V6V_091 | No text annotation | ||
| HL_4V6V_092 | Pseudoknot geometry | ||
| HL_4V6V_093 | GNRA | ||
| HL_4V6V_094 | GNRA | ||
| HL_4V6V_095 | No text annotation | ||
| HL_4V6V_096 | No text annotation | ||
| HL_4V6V_097 | No text annotation | ||
| HL_4V6V_098 | No text annotation | ||
| HL_4V6V_099 | GNRA | ||
| HL_4V6V_100 | No text annotation | ||
| HL_4V6V_101 | Ribsomal LSU H95 | ||
| HL_4V6V_102 | No text annotation | ||
| HL_4V6V_103 | No text annotation | ||
| HL_4V6V_104 | No text annotation | ||
| HL_4V6V_105 | GNRA | ||
| HL_4V6V_110 | No text annotation | ||
| HL_4V6V_106 | No text annotation | ||
| HL_4V6V_107 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6V_001 | Isolated non-canonical cWW pair | ||
| IL_4V6V_002 | Single bulged A | ||
| IL_4V6V_003 | No text annotation | ||
| IL_4V6V_004 | Minor groove platform | ||
| IL_4V6V_005 | Multiple bulged bases | ||
| IL_4V6V_006 | Minor groove platform with extra cWW | ||
| IL_4V6V_007 | Minor groove platform | ||
| IL_4V6V_008 | Major groove intercalation | ||
| IL_4V6V_009 | Isolated non-canonical cWW pair | ||
| IL_4V6V_010 | No text annotation | ||
| IL_4V6V_011 | Isolated cWH basepair | ||
| IL_4V6V_012 | tWH-tWH-tHW-tHW | ||
| IL_4V6V_013 | No text annotation | ||
| IL_4V6V_014 | Kink-turn with non-sequential stacking | ||
| IL_4V6V_015 | No text annotation | ||
| IL_4V6V_204 | No text annotation | ||
| IL_4V6V_185 | No text annotation | ||
| IL_4V6V_016 | C-loop | ||
| IL_4V6V_017 | Single bulged U | ||
| IL_4V6V_018 | C-loop | ||
| IL_4V6V_019 | Single bulged G | ||
| IL_4V6V_020 | No text annotation | ||
| IL_4V6V_021 | No text annotation | ||
| IL_4V6V_022 | tSH-tHW-tWW | ||
| IL_4V6V_023 | No text annotation | ||
| IL_4V6V_024 | No text annotation | ||
| IL_4V6V_025 | Single stack bend | ||
| IL_4V6V_026 | SSU/LSU pseudoknot | ||
| IL_4V6V_027 | Kink-turn related | ||
| IL_4V6V_028 | No text annotation | ||
| IL_4V6V_029 | tSH-tHW-tHS | ||
| IL_4V6V_186 | Isolated non-canonical cWW pair | ||
| IL_4V6V_030 | Major groove platform | ||
| IL_4V6V_031 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6V_032 | No text annotation | ||
| IL_4V6V_033 | Major groove platform; stack outside cWW | ||
| IL_4V6V_034 | Minor groove platform | ||
| IL_4V6V_035 | Tandem non-canonical cWW pairs | ||
| IL_4V6V_036 | No text annotation | ||
| IL_4V6V_037 | Kink-turn | ||
| IL_4V6V_038 | Left turn | ||
| IL_4V6V_039 | tSH-tHW-tHS | ||
| IL_4V6V_040 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V6V_041 | Single bulged A | ||
| IL_4V6V_042 | Single bulged G | ||
| IL_4V6V_043 | Minor groove platform | ||
| IL_4V6V_044 | Single bulged A | ||
| IL_4V6V_187 | Minor groove platform | ||
| IL_4V6V_045 | No text annotation | ||
| IL_4V6V_046 | Single stack bend | ||
| IL_4V6V_047 | Single bulged U | ||
| IL_4V6V_048 | Isolated non-canonical cWW pair | ||
| IL_4V6V_049 | Isolated cWS basepair | ||
| IL_4V6V_050 | Minor groove platform | ||
| IL_4V6V_051 | Tandem non-canonical cWW pairs | ||
| IL_4V6V_052 | No text annotation | ||
| IL_4V6V_053 | Minor groove platform | ||
| IL_4V6V_054 | No text annotation | ||
| IL_4V6V_055 | No text annotation | ||
| IL_4V6V_056 | No text annotation | ||
| IL_4V6V_057 | Double sheared with non-canonical cWW | ||
| IL_4V6V_058 | No text annotation | ||
| IL_4V6V_059 | No text annotation | ||
| IL_4V6V_060 | No text annotation | ||
| IL_4V6V_188 | Isolated non-canonical cWW pair | ||
| IL_4V6V_061 | No text annotation | ||
| IL_4V6V_189 | No text annotation | ||
| IL_4V6V_190 | Isolated non-canonical cWW pair | ||
| IL_4V6V_062 | Tandem non-canonical cWW pairs | ||
| IL_4V6V_063 | Double sheared | ||
| IL_4V6V_064 | Triple sheared related | ||
| IL_4V6V_065 | Single bulged A | ||
| IL_4V6V_066 | No text annotation | ||
| IL_4V6V_067 | tSH-tHW | ||
| IL_4V6V_068 | Triple sheared with non-canonical cWW | ||
| IL_4V6V_069 | Single bulged A | ||
| IL_4V6V_070 | Minor groove platform | ||
| IL_4V6V_071 | No text annotation | ||
| IL_4V6V_072 | Single stack bend | ||
| IL_4V6V_191 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4V6V_073 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6V_074 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V6V_075 | No text annotation | ||
| IL_4V6V_076 | No text annotation | ||
| IL_4V6V_077 | No text annotation | ||
| IL_4V6V_078 | No text annotation | ||
| IL_4V6V_079 | Double sheared | ||
| IL_4V6V_080 | AAA cross-strand stack | ||
| IL_4V6V_081 | Isolated non-canonical cWW pair | ||
| IL_4V6V_082 | tHW-tHW cross-strand stack | ||
| IL_4V6V_192 | Isolated near basepair | ||
| IL_4V6V_083 | Single bulged A | ||
| IL_4V6V_084 | Single bulged G | ||
| IL_4V6V_085 | Triple sheared | ||
| IL_4V6V_086 | Major groove platform | ||
| IL_4V6V_087 | Multiple bulged bases | ||
| IL_4V6V_088 | Single stack bend | ||
| IL_4V6V_089 | No text annotation | ||
| IL_4V6V_090 | No text annotation | ||
| IL_4V6V_205 | Single stack bend | ||
| IL_4V6V_091 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6V_092 | Minor groove platform | ||
| IL_4V6V_093 | C-loop | ||
| IL_4V6V_094 | Tandem non-canonical cWW pairs | ||
| IL_4V6V_095 | Double sheared with non-canonical cWW | ||
| IL_4V6V_096 | No text annotation | ||
| IL_4V6V_193 | No text annotation | ||
| IL_4V6V_097 | No text annotation | ||
| IL_4V6V_098 | Single bulged C | ||
| IL_4V6V_099 | UAA/GAN | ||
| IL_4V6V_100 | SSU/LSU pseudoknot | ||
| IL_4V6V_101 | Single bulged U | ||
| IL_4V6V_102 | Kink-turn related | ||
| IL_4V6V_103 | No text annotation | ||
| IL_4V6V_104 | Isolated non-canonical cWW pair | ||
| IL_4V6V_105 | Tandem non-canonical cWW pairs | ||
| IL_4V6V_106 | Kink-turn | ||
| IL_4V6V_107 | No text annotation | ||
| IL_4V6V_108 | Major groove platform | ||
| IL_4V6V_109 | Isolated cWS basepair | ||
| IL_4V6V_110 | No text annotation | ||
| IL_4V6V_111 | Kink-turn | ||
| IL_4V6V_112 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6V_113 | Major groove platform; stack outside cWW | ||
| IL_4V6V_114 | C-loop | ||
| IL_4V6V_115 | UAA/GAN | ||
| IL_4V6V_116 | tSH-tHW-tHS | ||
| IL_4V6V_117 | No text annotation | ||
| IL_4V6V_118 | UAA/GAN | ||
| IL_4V6V_119 | Tandem non-canonical cWW pairs | ||
| IL_4V6V_120 | Other IL | ||
| IL_4V6V_121 | No text annotation | ||
| IL_4V6V_122 | tSH-tHW-tHS | ||
| IL_4V6V_123 | No text annotation | ||
| IL_4V6V_124 | No text annotation | ||
| IL_4V6V_125 | UAA/GAN variation | ||
| IL_4V6V_126 | No text annotation | ||
| IL_4V6V_127 | Isolated tWW turn | ||
| IL_4V6V_128 | Major groove platform; stack outside cWW | ||
| IL_4V6V_194 | No text annotation | ||
| IL_4V6V_129 | Intercalated tWH | ||
| IL_4V6V_130 | tSH-tSH-tHH-tHS | ||
| IL_4V6V_131 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6V_132 | Triple sheared | ||
| IL_4V6V_133 | Single bulged C | ||
| IL_4V6V_134 | Single bulged A | ||
| IL_4V6V_135 | Kink-turn related | ||
| IL_4V6V_136 | No text annotation | ||
| IL_4V6V_137 | Major groove intercalation | ||
| IL_4V6V_138 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6V_195 | No text annotation | ||
| IL_4V6V_139 | UAA/GAN related | ||
| IL_4V6V_140 | Multiple bulged bases | ||
| IL_4V6V_141 | No text annotation | ||
| IL_4V6V_142 | Major groove platform | ||
| IL_4V6V_143 | Major groove platform with intercalation | ||
| IL_4V6V_144 | No text annotation | ||
| IL_4V6V_196 | Single bulged U | ||
| IL_4V6V_145 | No text annotation | ||
| IL_4V6V_197 | No text annotation | ||
| IL_4V6V_146 | Isolated tHS basepair with bulges | ||
| IL_4V6V_147 | No text annotation | ||
| IL_4V6V_148 | Isolated non-canonical cWW pair | ||
| IL_4V6V_149 | No text annotation | ||
| IL_4V6V_198 | Single stack bend | ||
| IL_4V6V_150 | Other IL | ||
| IL_4V6V_151 | No text annotation | ||
| IL_4V6V_152 | No text annotation | ||
| IL_4V6V_153 | Single bulged U | ||
| IL_4V6V_154 | Single stack bend | ||
| IL_4V6V_155 | Double sheared | ||
| IL_4V6V_156 | Single bulged U | ||
| IL_4V6V_199 | Single stack bend | ||
| IL_4V6V_157 | No text annotation | ||
| IL_4V6V_200 | Multiple bulged bases | ||
| IL_4V6V_158 | Decoding loop related | ||
| IL_4V6V_201 | Major groove platform | ||
| IL_4V6V_159 | Major groove minor groove platform with extra cWW | ||
| IL_4V6V_160 | Double sheared with non-canonical cWW | ||
| IL_4V6V_202 | Major groove platform | ||
| IL_4V6V_161 | No text annotation | ||
| IL_4V6V_162 | Isolated non-canonical cWW with bulges | ||
| IL_4V6V_163 | No text annotation | ||
| IL_4V6V_164 | Major groove platform with intercalation | ||
| IL_4V6V_165 | No text annotation | ||
| IL_4V6V_166 | Single bulged A | ||
| IL_4V6V_167 | tSH-tHS-tHW | ||
| IL_4V6V_168 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V6V_169 | C-loop | ||
| IL_4V6V_170 | UAA/GAN related, with intercalation | ||
| IL_4V6V_171 | Multiple bulged bases | ||
| IL_4V6V_172 | UAA/GAN with extra cWW | ||
| IL_4V6V_173 | Isolated cWS basepair | ||
| IL_4V6V_174 | No text annotation | ||
| IL_4V6V_175 | Major groove intercalation | ||
| IL_4V6V_176 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V6V_203 | No text annotation | ||
| IL_4V6V_177 | No text annotation | ||
| IL_4V6V_178 | Not an internal loop | ||
| IL_4V6V_179 | Major groove intercalation | ||
| IL_4V6V_180 | No text annotation | ||
| IL_4V6V_181 | No text annotation | ||
| IL_4V6V_182 | No text annotation | ||
| IL_4V6V_183 | Symmetric double minor groove platform | ||
| IL_4V6V_184 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6V_001 | No text annotation | ||
| J3_4V6V_028 | No text annotation | ||
| J3_4V6V_002 | No text annotation | ||
| J3_4V6V_029 | No text annotation | ||
| J3_4V6V_003 | No text annotation | ||
| J3_4V6V_004 | No text annotation | ||
| J3_4V6V_005 | No text annotation | ||
| J3_4V6V_006 | No text annotation | ||
| J3_4V6V_007 | No text annotation | ||
| J3_4V6V_008 | No text annotation | ||
| J3_4V6V_030 | No text annotation | ||
| J3_4V6V_009 | No text annotation | ||
| J3_4V6V_010 | No text annotation | ||
| J3_4V6V_011 | No text annotation | ||
| J3_4V6V_012 | No text annotation | ||
| J3_4V6V_031 | No text annotation | ||
| J3_4V6V_013 | No text annotation | ||
| J3_4V6V_014 | No text annotation | ||
| J3_4V6V_032 | No text annotation | ||
| J3_4V6V_015 | No text annotation | ||
| J3_4V6V_016 | No text annotation | ||
| J3_4V6V_033 | No text annotation | ||
| J3_4V6V_017 | No text annotation | ||
| J3_4V6V_018 | No text annotation | ||
| J3_4V6V_019 | No text annotation | ||
| J3_4V6V_020 | No text annotation | ||
| J3_4V6V_021 | No text annotation | ||
| J3_4V6V_034 | No text annotation | ||
| J3_4V6V_035 | No text annotation | ||
| J3_4V6V_022 | Kink-turn 3-way junction | ||
| J3_4V6V_036 | No text annotation | ||
| J3_4V6V_023 | No text annotation | ||
| J3_4V6V_024 | No text annotation | ||
| J3_4V6V_025 | No text annotation | ||
| J3_4V6V_026 | No text annotation | ||
| J3_4V6V_027 | No text annotation | ||
| J4_4V6V_001 | tRNA junction | ||
| J4_4V6V_002 | No text annotation | ||
| J4_4V6V_003 | No text annotation | ||
| J4_4V6V_004 | No text annotation | ||
| J4_4V6V_005 | No text annotation | ||
| J4_4V6V_006 | No text annotation | ||
| J4_4V6V_007 | No text annotation | ||
| J4_4V6V_008 | No text annotation | ||
| J4_4V6V_009 | No text annotation | ||
| J4_4V6V_010 | No text annotation | ||
| J4_4V6V_011 | No text annotation | ||
| J4_4V6V_012 | No text annotation | ||
| J4_4V6V_013 | No text annotation | ||
| J4_4V6V_018 | No text annotation | ||
| J4_4V6V_014 | No text annotation | ||
| J4_4V6V_015 | No text annotation | ||
| J4_4V6V_016 | No text annotation | ||
| J4_4V6V_017 | No text annotation | ||
| J5_4V6V_001 | No text annotation | ||
| J5_4V6V_002 | No text annotation | ||
| J5_4V6V_003 | No text annotation | ||
| J5_4V6V_004 | No text annotation | ||
| J5_4V6V_005 | No text annotation | ||
| J5_4V6V_006 | No text annotation | ||
| J5_4V6V_007 | No text annotation | ||
| J5_4V6V_008 | No text annotation | ||
| J5_4V6V_010 | No text annotation | ||
| J5_4V6V_009 | No text annotation | ||
| J6_4V6V_001 | No text annotation | ||
| J7_4V6V_001 | No text annotation | ||
| J7_4V6V_002 | No text annotation |
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