HL_4V6V_037

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6V_037 not in the Motif Atlas

Homologous match to HL_7A0S_001

Geometric discrepancy: 0.499

The information below is about HL_7A0S_001

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_17803.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V6V|1|BA|U|59
4V6V|1|BA|G|60
4V6V|1|BA|C|61
4V6V|1|BA|U|62
4V6V|1|BA|A|63
4V6V|1|BA|A|64
4V6V|1|BA|U|65
4V6V|1|BA|C|66
4V6V|1|BA|U|67
4V6V|1|BA|G|68

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L29

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23