HL_4V6V_042

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V6V|1|BA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6V_042 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.1828

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V6V|1|BA|G|194
4V6V|1|BA|A|195
4V6V|1|BA|A|196
4V6V|1|BA|A|197
4V6V|1|BA|C|198
4V6V|1|BA|A|199
4V6V|1|BA|U|200
4V6V|1|BA|C|201

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BP

50S ribosomal protein L15