HL_4V6V_045

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4V6V|1|BA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6V_045 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1335

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

4V6V|1|BA|C|305
4V6V|1|BA|U|306
4V6V|1|BA|G|307
4V6V|1|BA|G|308
4V6V|1|BA|A|309
4V6V|1|BA|A|310
4V6V|1|BA|A|311
4V6V|1|BA|G|312

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BY

50S ribosomal protein L24