HL_4V6X_005

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

4V6X|1|A5|C|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.254

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4V6X|1|A5|U|204
4V6X|1|A5|C|205
4V6X|1|A5|U|206
4V6X|1|A5|G|207
4V6X|1|A5|A|208
4V6X|1|A5|U|209
4V6X|1|A5|C|210
4V6X|1|A5|G|211

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L26

Chain Ce

60S ribosomal protein L32