RNA 3D Hub //

4V6X Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V6X_0031/A5/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_4V6X_0081/A5/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_4V6X_0161/A5/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_4V6X_0231/A5/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_4V6X_0251/A5/1675:1680Externally structured
homologous
HL_5TBW_022
NA
HL_4V6X_0281/A5/1864:1870GNRA
homologous
HL_5TBW_025
NA
HL_4V6X_0291/A5/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_4V6X_0341/A5/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_4V6X_0371/A5/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_4V6X_1221/A5/2624:2632Pseudoknot geometry
homologous
HL_8CRE_036
NA
HL_4V6X_0451/A5/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_4V6X_0461/A5/2872:2877UNCG
geometric
HL_1I6U_001
HL_61337.2
HL_4V6X_0481/A5/3639:3649No text annotation
homologous
HL_5TBW_046
NA
HL_4V6X_0501/A5/3724:3729GNRA
homologous
HL_5TBW_048
NA
HL_4V6X_0521/A5/3796:3804No text annotation
homologous
HL_5TBW_050
NA
HL_4V6X_0531/A5/3873:3882No text annotation
homologous
HL_8C3A_051
NA
HL_4V6X_1181/A5/3977:4034No text annotation
HL_4V6X_1231/A5/4193:4201No text annotation
homologous
HL_8P9A_165
HL_11974.2
HL_4V6X_0571/A5/4210:4222No text annotation
homologous
HL_8C3A_056
NA
HL_4V6X_0601/A5/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_4V6X_0631/A5/4417:4425No text annotation
homologous
HL_5TBW_061
NA
HL_4V6X_0651/A5/4497:4503No text annotation
homologous
HL_5TBW_063
NA
HL_4V6X_0691/A5/4688:4702No text annotation
homologous
HL_5TBW_067
NA
HL_4V6X_0711/A5/4975:4983No text annotation
geometric
HL_5TBW_070
NA
HL_4V6X_0791/B2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_4V6X_0851/B2/322:329No text annotation
geometric
HL_5TBW_012
NA
HL_4V6X_0971/B2/957:966No text annotation
homologous
HL_4V88_206
NA
HL_4V6X_0981/B2/994:999GNRA
homologous
HL_4V88_207
NA
HL_4V6X_1041/B2/1295:1304Anticodon loop related
homologous
HL_4V88_213
NA
HL_4V6X_1111/B2/1658:1666No text annotation
homologous
HL_4V88_220
NA

Problematic loops

#loop idProblemSequence
HL_4V6X_001No text annotation
HL_4V6X_002No text annotation
HL_4V6X_004No text annotation
HL_4V6X_005T-loop with 2 stacked bulged bases
HL_4V6X_006No text annotation
HL_4V6X_007T-loop with unstacked turn
HL_4V6X_009Pseudoknot geometry
HL_4V6X_010GNRA
HL_4V6X_011GNRA
HL_4V6X_012Externally structured
HL_4V6X_013No text annotation
HL_4V6X_014GNRA
HL_4V6X_015GNRA
HL_4V6X_017No text annotation
HL_4V6X_018GNRA
HL_4V6X_019Externally structured
HL_4V6X_020Pseudoknot geometry
HL_4V6X_021No text annotation
HL_4V6X_116No text annotation
HL_4V6X_022GNRA
HL_4V6X_024No text annotation
HL_4V6X_026GNRA
HL_4V6X_027No text annotation
HL_4V6X_030No text annotation
HL_4V6X_031No text annotation
HL_4V6X_117GNRA wlth tandem sheared
HL_4V6X_032GNRA
HL_4V6X_033T-loop with 2 stacked bulged bases
HL_4V6X_035GNRA variation
HL_4V6X_036No text annotation
HL_4V6X_038GNRA
HL_4V6X_039GNRA
HL_4V6X_040No text annotation
HL_4V6X_041No text annotation
HL_4V6X_042Mini UNCG
HL_4V6X_043Mini UNCG
HL_4V6X_044No text annotation
HL_4V6X_047No text annotation
HL_4V6X_049GNRA
HL_4V6X_051No text annotation
HL_4V6X_054UNCG
HL_4V6X_055No text annotation
HL_4V6X_056No text annotation
HL_4V6X_058No text annotation
HL_4V6X_059Pseudoknot geometry
HL_4V6X_061GNRA
HL_4V6X_062No text annotation
HL_4V6X_064No text annotation
HL_4V6X_124GNRA variation
HL_4V6X_066GNRA
HL_4V6X_067GNRA
HL_4V6X_068Ribsomal LSU H95
HL_4V6X_070No text annotation
HL_4V6X_072No text annotation
HL_4V6X_119No text annotation
HL_4V6X_073No text annotation
HL_4V6X_074GNRA
HL_4V6X_075Pseudoknot with intercalation
HL_4V6X_076No text annotation
HL_4V6X_077No text annotation
HL_4V6X_078T-loop related
HL_4V6X_080No text annotation
HL_4V6X_081GNRA related
HL_4V6X_082GNRA
HL_4V6X_083No text annotation
HL_4V6X_084T-loop with 1 bulged base
HL_4V6X_086No text annotation
HL_4V6X_087No text annotation
HL_4V6X_088No text annotation
HL_4V6X_089UNCG
HL_4V6X_090No text annotation
HL_4V6X_091GNRA
HL_4V6X_092No text annotation
HL_4V6X_093GNRA variation
HL_4V6X_120No text annotation
HL_4V6X_094No text annotation
HL_4V6X_095No text annotation
HL_4V6X_096Pseudoknot geometry
HL_4V6X_099No text annotation
HL_4V6X_100No text annotation
HL_4V6X_101GNRA
HL_4V6X_102GNRA
HL_4V6X_103No text annotation
HL_4V6X_105GNRA
HL_4V6X_106No text annotation
HL_4V6X_107GNRA
HL_4V6X_108GNRA
HL_4V6X_109GNRA
HL_4V6X_110No text annotation
HL_4V6X_121No text annotation
HL_4V6X_112GNRA variation
HL_4V6X_113No text annotation
HL_4V6X_114tRNA anticodon loop
HL_4V6X_115T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V6X_0021/A5/12:14,
1/A8/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_4V6X_0041/A5/30:37,
1/A5/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_4V6X_0051/A5/81:88,
1/A5/96:102		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_4V6X_0061/A5/118:121,
1/A5/152:153		Major groove intercalation
geometric
IL_1NBS_009
IL_71421.2
IL_4V6X_2731/A5/118:122,
1/A5/147:153		No text annotation
IL_4V6X_0071/A5/121:122,
1/A5/147:152		No text annotation
homologous
IL_8C3A_007
NA
IL_4V6X_2741/A5/169:173,
1/A5/263:266		No text annotation
IL_4V6X_0121/A5/195:196,
1/A5/244:246		No text annotation
IL_4V6X_0161/A5/415:421,
1/A8/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_4V6X_0181/A5/448:451,
1/A5/1296:1298		No text annotation
geometric
IL_4V84_070
NA
IL_4V6X_2791/A5/1077:1079,
1/A5/1221:1234		No text annotation
IL_4V6X_0511/A5/1467:1468,
1/A5/1496:1498		Single bulged A
homologous
IL_8C3A_026
NA
IL_4V6X_0531/A5/1520:1522,
1/A5/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_4V6X_0541/A5/1522:1526,
1/A5/1648:1655		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_4V6X_0551/A5/1550:1555,
1/A5/1572:1578		No text annotation
geometric
IL_5J7L_057
NA
IL_4V6X_0631/A5/1732:1738,
1/A5/1790:1797		No text annotation
IL_4V6X_0721/A5/1905:1909,
1/A5/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_4V6X_0761/A5/1926:1933,
1/A5/2053:2058		No text annotation
homologous
IL_5TBW_051
NA
IL_4V6X_0771/A5/1933:1944,
1/A5/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_4V6X_2901/A5/2087:2128,
1/A5/2246:2270		No text annotation
IL_4V6X_0841/A5/2290:2292,
1/A5/2342:2345		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_4V6X_0861/A5/2302:2309,
1/A5/2329:2333		Kink-turn
homologous
IL_5TBW_059
NA
IL_4V6X_0881/A5/2358:2364,
1/A5/3858:3863		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_4V6X_2921/A5/2847:2855,
1/A5/3837:3841		No text annotation
homologous
IL_8C3A_484
NA
IL_4V6X_1041/A5/2850:2855,
1/A5/3837:3840		No text annotation
homologous
IL_8C3A_083
NA
IL_4V6X_1051/A5/2867:2872,
1/A5/2877:2883		No text annotation
homologous
IL_8C3A_084
NA
IL_4V6X_1181/A5/3900:3902,
1/A5/4558:4561		No text annotation
homologous
IL_8C3A_097
NA
IL_4V6X_1261/A5/4082:4088,
1/A5/4161:4164		No text annotation
homologous
IL_8C3A_106
NA
IL_4V6X_1281/A5/4191:4192,
1/A5/4202:4204		Single bulged A
geometric
IL_5TBW_098
NA
IL_4V6X_1311/A5/4347:4350,
1/A5/4364:4365		Single stack bend
geometric
IL_5J7L_032
NA
IL_4V6X_1321/A5/4400:4401,
1/A5/4442:4444		Major groove platform
geometric
IL_5TBW_102
NA
IL_4V6X_1331/A5/4401:4403,
1/A5/4440:4442		Isolated non-canonical cWW pair
homologous
IL_5TBW_103
NA
IL_4V6X_1381/A5/4456:4458,
1/A5/4520:4524		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_4V6X_1441/A5/4580:4582,
1/A5/4721:4723		Isolated cWS basepair
geometric
IL_4TS2_003
NA
IL_4V6X_1451/A5/4582:4585,
1/A5/4717:4721		Double sheared
geometric
IL_4V88_396
NA
IL_4V6X_1491/A5/4632:4637,
1/A5/4662:4666		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_4V6X_1511/A5/4641:4642,
1/A5/4655:4658		No text annotation
homologous
IL_8C3A_128
NA
IL_4V6X_1551/A5/4754:4765,
1/A5/4869:4878		No text annotation
IL_4V6X_1601/A5/4972:4975,
1/A5/4983:4986		Tandem non-canonical cWW pairs
homologous
IL_5TBW_129
NA
IL_4V6X_1661/A5/5014:5017,
1/A5/5032:5035		Double sheared; A in syn
geometric
IL_5TBW_135
NA
IL_4V6X_2961/A5/5014:5019,
1/A5/5030:5035		No text annotation
IL_4V6X_1691/A7/28:29,
1/A7/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_73108.2
IL_4V6X_1731/A7/82:85,
1/A7/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_4V6X_1741/A8/64:66,
1/A8/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_4V6X_1761/B2/34:36,
1/B2/519:521		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_4V6X_1781/B2/41:47,
1/B2/479:481		No text annotation
homologous
IL_4V88_387
NA
IL_4V6X_1841/B2/112:115,
1/B2/348:349		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_4V6X_1931/B2/359:364,
1/B2/396:403		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_4V6X_3221/B2/599:608,
1/B2/635:637		No text annotation
IL_4V6X_2051/B2/611:617,
1/B2/624:632		Kink-turn related
homologous
IL_4V88_415
NA
IL_4V6X_2061/B2/663:665,
1/B2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_4KNQ_003
IL_01003.2
IL_4V6X_2071/B2/665:671,
1/B2/1161:1162		No text annotation
homologous
IL_4V88_416
NA
IL_4V6X_3231/B2/807:815,
1/B2/849:856		No text annotation
homologous
IL_8CRE_430
IL_59049.2
IL_4V6X_2311/B2/1168:1175,
1/B2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_4V6X_2321/B2/1203:1204,
1/B2/1694:1696		Single bulged A
homologous
IL_4V88_441
NA
IL_4V6X_3051/B2/1214:1217,
1/B2/1681:1685		C-loop
homologous
IL_8C3A_449
NA
IL_4V6X_3121/B2/1541:1558,
1/B2/1577:1592		No text annotation
IL_4V6X_2561/B2/1550:1558,
1/B2/1577:1582		180 degree turn
geometric
IL_6CZR_161
NA
IL_4V6X_2591/B2/1700:1702,
1/B2/1833:1836		No text annotation
homologous
IL_4V88_463
NA
IL_4V6X_2601/B2/1702:1705,
1/B2/1829:1833		No text annotation
geometric
IL_4V88_464
NA
IL_4V6X_2671/B2/1733:1736,
1/B2/1798:1801		Double sheared
homologous
IL_4V88_471
NA

Problematic loops

#loop idProblemSequence
IL_4V6X_272No text annotation
IL_4V6X_001Single bulged C
IL_4V6X_003Isolated cWH basepair
IL_4V6X_008No text annotation
IL_4V6X_009No text annotation
IL_4V6X_010Single stack bend
IL_4V6X_011No text annotation
IL_4V6X_013Single bulged U
IL_4V6X_014Single bulged A
IL_4V6X_015No text annotation
IL_4V6X_017No text annotation
IL_4V6X_019Single bulged C
IL_4V6X_020Isolated non-canonical cWW pair
IL_4V6X_021No text annotation
IL_4V6X_275No text annotation
IL_4V6X_022No text annotation
IL_4V6X_023No text annotation
IL_4V6X_024No text annotation
IL_4V6X_025Single stack bend
IL_4V6X_026No text annotation
IL_4V6X_027Multiple bulged bases
IL_4V6X_028Single stack bend
IL_4V6X_029Decoding loop related
IL_4V6X_030Multiple bulged bases
IL_4V6X_031Single stack bend
IL_4V6X_032No text annotation
IL_4V6X_276No text annotation
IL_4V6X_033No text annotation
IL_4V6X_277No text annotation
IL_4V6X_034No text annotation
IL_4V6X_035Isolated non-canonical cWW pair
IL_4V6X_036No text annotation
IL_4V6X_278No text annotation
IL_4V6X_037Single stack bend
IL_4V6X_038No text annotation
IL_4V6X_039No text annotation
IL_4V6X_040No text annotation
IL_4V6X_041Minor groove platform
IL_4V6X_280No text annotation
IL_4V6X_042No text annotation
IL_4V6X_043Single bulged C
IL_4V6X_044Single stack bend
IL_4V6X_045No text annotation
IL_4V6X_281Single stack bend
IL_4V6X_046Isolated near basepair
IL_4V6X_047No text annotation
IL_4V6X_314No text annotation
IL_4V6X_282No text annotation
IL_4V6X_048No text annotation
IL_4V6X_049No text annotation
IL_4V6X_050Double sheared
IL_4V6X_283No text annotation
IL_4V6X_052Single stack bend
IL_4V6X_284No text annotation
IL_4V6X_056No text annotation
IL_4V6X_315No text annotation
IL_4V6X_057Single bulged U
IL_4V6X_058Multiple bulged bases
IL_4V6X_059Isolated non-canonical cWW pair
IL_4V6X_060No text annotation
IL_4V6X_316No text annotation
IL_4V6X_061180 degree turn
IL_4V6X_062Isolated non-canonical cWW pair
IL_4V6X_285Tandem non-canonical cWW pairs
IL_4V6X_286No text annotation
IL_4V6X_064C-loop
IL_4V6X_065No text annotation
IL_4V6X_287Tandem non-canonical cWW pairs
IL_4V6X_066Isolated non-canonical cWW pair
IL_4V6X_067No text annotation
IL_4V6X_068Isolated non-canonical cWW pair
IL_4V6X_069Single bulged G
IL_4V6X_070Isolated non-canonical cWW pair
IL_4V6X_071Isolated cWS basepair
IL_4V6X_073SSU/LSU pseudoknot
IL_4V6X_074No text annotation
IL_4V6X_075No text annotation
IL_4V6X_078Single bulged U
IL_4V6X_079Kink-turn
IL_4V6X_288No text annotation
IL_4V6X_289No text annotation
IL_4V6X_080No text annotation
IL_4V6X_081Major groove platform with extra cWW
IL_4V6X_082Single bulged C
IL_4V6X_083Isolated cWS basepair
IL_4V6X_085Single bulged A
IL_4V6X_087No text annotation
IL_4V6X_089C-loop
IL_4V6X_090UAA/GAN
IL_4V6X_091Single stack bend
IL_4V6X_092Isolated non-canonical cWW pair
IL_4V6X_093Single stack bend
IL_4V6X_094Triple sheared
IL_4V6X_095Single bulged C
IL_4V6X_096Single stack bend
IL_4V6X_097No text annotation
IL_4V6X_098No text annotation
IL_4V6X_291No text annotation
IL_4V6X_317No text annotation
IL_4V6X_099No text annotation
IL_4V6X_100No text annotation
IL_4V6X_101No text annotation
IL_4V6X_102Isolated tWW turn
IL_4V6X_103Major groove platform; stack outside cWW
IL_4V6X_106Isolated non-canonical cWW pair
IL_4V6X_107No text annotation
IL_4V6X_293No text annotation
IL_4V6X_108Single bulged A
IL_4V6X_109Kink-turn related
IL_4V6X_110Major groove intercalation
IL_4V6X_111Major groove intercalation
IL_4V6X_112Single bulged U
IL_4V6X_113Major groove platform with extra pair
IL_4V6X_114No text annotation
IL_4V6X_115Bulged stacked bases
IL_4V6X_116No text annotation
IL_4V6X_117No text annotation
IL_4V6X_119Single bulged U
IL_4V6X_120Minor groove platform
IL_4V6X_121Isolated tHS basepair with bulges
IL_4V6X_122Not an internal loop
IL_4V6X_123No text annotation
IL_4V6X_124Isolated non-canonical cWW pair
IL_4V6X_294No text annotation
IL_4V6X_125No text annotation
IL_4V6X_318No text annotation
IL_4V6X_127Single stack bend
IL_4V6X_129Isolated tHS basepair with bulges
IL_4V6X_130Tandem non-canonical cWW pairs
IL_4V6X_134Major groove platform
IL_4V6X_135Major groove minor groove platform with extra cWW
IL_4V6X_136No text annotation
IL_4V6X_137Major groove platform
IL_4V6X_139Multiple bulged bases
IL_4V6X_140Isolated non-canonical cWW pair
IL_4V6X_295No text annotation
IL_4V6X_141No text annotation
IL_4V6X_142Isolated non-canonical cWW pair
IL_4V6X_143Single bulged A
IL_4V6X_146Isolated non-canonical cWW pair
IL_4V6X_1478x7 Sarcin-Ricin; G-bulge
IL_4V6X_148No text annotation
IL_4V6X_150Isolated non-canonical cWW pair
IL_4V6X_152UAA/GAN
IL_4V6X_153Single stack bend
IL_4V6X_154Tandem non-canonical cWW pairs
IL_4V6X_156Isolated non-canonical cWW with bulges
IL_4V6X_157Tandem non-canonical cWW pairs
IL_4V6X_158No text annotation
IL_4V6X_159No text annotation
IL_4V6X_161No text annotation
IL_4V6X_162No text annotation
IL_4V6X_163No text annotation
IL_4V6X_164No text annotation
IL_4V6X_165Single bulged U
IL_4V6X_167Single bulged A
IL_4V6X_168No text annotation
IL_4V6X_297No text annotation
IL_4V6X_298No text annotation
IL_4V6X_170Symmetric double minor groove platform
IL_4V6X_1717x6 Sarcin-Ricin; G-bulge
IL_4V6X_172Isolated non-canonical cWW pair
IL_4V6X_175Isolated non-canonical cWW pair
IL_4V6X_177Double sheared
IL_4V6X_179Minor groove platform
IL_4V6X_180No text annotation
IL_4V6X_181No text annotation
IL_4V6X_182Isolated non-canonical cWW pair
IL_4V6X_183Isolated non-canonical cWW pair
IL_4V6X_185No text annotation
IL_4V6X_186tWH-tWH-tHW-tHW
IL_4V6X_187No text annotation
IL_4V6X_188Double sheared; A in syn; two near cWW pairs
IL_4V6X_319No text annotation
IL_4V6X_299No text annotation
IL_4V6X_189Tandem non-canonical cWW pairs
IL_4V6X_190No text annotation
IL_4V6X_191Single bulged A
IL_4V6X_192No text annotation
IL_4V6X_300No text annotation
IL_4V6X_194No text annotation
IL_4V6X_301No text annotation
IL_4V6X_195No text annotation
IL_4V6X_196Isolated cWH basepair
IL_4V6X_197Isolated near basepair
IL_4V6X_198Single bulged U
IL_4V6X_320C-loop
IL_4V6X_199C-loop with extra cWW pair
IL_4V6X_321Single bulged G
IL_4V6X_302No text annotation
IL_4V6X_200No text annotation
IL_4V6X_201Single stack bend
IL_4V6X_202No text annotation
IL_4V6X_203Double sheared
IL_4V6X_204No text annotation
IL_4V6X_208Isolated non-canonical cWW pair
IL_4V6X_209tSH-tHW-tHS
IL_4V6X_210Isolated non-canonical cWW pair
IL_4V6X_211Isolated non-canonical cWW pair
IL_4V6X_212Isolated non-canonical cWW pair
IL_4V6X_213Multiple bulged bases
IL_4V6X_214Minor groove platform
IL_4V6X_215Major groove minor groove platform; mini C-loop
IL_4V6X_216Tandem non-canonical cWW pairs
IL_4V6X_217No text annotation
IL_4V6X_218Single stack bend
IL_4V6X_219No text annotation
IL_4V6X_324Major groove platform; stack outside cWW
IL_4V6X_220Tandem non-canonical cWW pairs
IL_4V6X_303Single bulged U
IL_4V6X_221Tandem non-canonical cWW pairs
IL_4V6X_222Tandem non-canonical cWW pairs
IL_4V6X_223Tandem non-canonical cWW pairs
IL_4V6X_224Kink-turn
IL_4V6X_225Other IL
IL_4V6X_226tSH-tHW-tHS
IL_4V6X_304No text annotation
IL_4V6X_227No text annotation
IL_4V6X_228Tandem non-canonical cWW pairs
IL_4V6X_229Isolated non-canonical cWW pair
IL_4V6X_230Single bulged U
IL_4V6X_233Single bulged G
IL_4V6X_234C-loop with extra cWW pair
IL_4V6X_235Isolated non-canonical cWW pair
IL_4V6X_306Minor groove platform
IL_4V6X_236Isolated non-canonical cWW with bulges
IL_4V6X_237Isolated non-canonical cWW pair
IL_4V6X_238No text annotation
IL_4V6X_307No text annotation
IL_4V6X_239No text annotation
IL_4V6X_240No text annotation
IL_4V6X_241Single bulged U
IL_4V6X_242Isolated cWS basepair
IL_4V6X_308No text annotation
IL_4V6X_243No text annotation
IL_4V6X_309No text annotation
IL_4V6X_244Minor groove platform
IL_4V6X_245Single bulged A
IL_4V6X_246Isolated cWH basepair
IL_4V6X_247Minor groove platform
IL_4V6X_248Tandem non-canonical cWW pairs
IL_4V6X_310No text annotation
IL_4V6X_249No text annotation
IL_4V6X_250No text annotation
IL_4V6X_251No text annotation
IL_4V6X_252No text annotation
IL_4V6X_253Major groove platform
IL_4V6X_254No text annotation
IL_4V6X_311Isolated non-canonical cWW pair
IL_4V6X_255No text annotation
IL_4V6X_257Isolated non-canonical cWW pair
IL_4V6X_258No text annotation
IL_4V6X_261Isolated non-canonical cWW pair
IL_4V6X_262No text annotation
IL_4V6X_263Isolated non-canonical cWW pair
IL_4V6X_264Double sheared
IL_4V6X_265No text annotation
IL_4V6X_266Tandem non-canonical cWW pairs
IL_4V6X_313Isolated non-canonical cWW pair
IL_4V6X_268Tandem non-canonical cWW pairs
IL_4V6X_269Triple sheared
IL_4V6X_270Multiple bulged bases
IL_4V6X_271Single stack bend

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V6X_0291/A5/196:199,
1/A5/215:228,
1/A5/240:244		No text annotation
J3_4V6X_0301/A5/351:367,
1/A5/374:379,
1/A8/21:24		No text annotation
homologous
J3_8C3A_047
NA
J3_4V6X_0031/A5/711:713,
1/A5/955:973,
1/A5/1280:1285		No text annotation
J3_4V6X_0051/A5/1531:1537,
1/A5/1622:1624,
1/A5/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_4V6X_0081/A5/2393:2399,
1/A5/2805:2807,
1/A5/2819:2822		No text annotation
homologous
J3_8C3A_006
NA
J3_4V6X_0091/A5/2402:2405,
1/A5/2785:2791,
1/A5/2800:2802		No text annotation
homologous
J3_5TBW_009
NA
J3_4V6X_0351/A5/2598:2602,
1/A5/2737:2738,
1/A5/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_4V6X_0361/A5/4091:4095,
1/A5/4113:4129,
1/A5/4155:4158		No text annotation
J3_4V6X_0371/A5/4228:4230,
1/A5/4331:4342,
1/A5/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_4V6X_0121/A5/4241:4243,
1/A5/4267:4269,
1/A5/4278:4283		No text annotation
homologous
J3_5TBW_013
NA
J3_4V6X_0131/A5/4463:4466,
1/A5/4491:4493,
1/A5/4507:4513		No text annotation
homologous
J3_5TBW_014
NA
J3_4V6X_0381/A5/4748:4754,
1/A5/4878:4885,
1/A5/4934:4952		No text annotation
J3_4V6X_0141/A5/4970:4972,
1/A5/4986:4991,
1/A5/5060:5063		No text annotation
J3_4V6X_0391/A5/4970:4975,
1/A5/4983:4991,
1/A5/5060:5063		No text annotation
J3_4V6X_0161/A8/44:45,
1/A8/58:64,
1/A8/95:99		No text annotation
homologous
J3_8P9A_067
J3_01004.1
J3_4V6X_0401/B2/40:47,
1/B2/479:487,
1/B2/512:514		No text annotation
homologous
J3_8P9A_069
J3_63856.1
J3_4V6X_0191/B2/938:941,
1/B2/985:993,
1/B2/1000:1004		No text annotation
homologous
J3_4V88_033
NA
J3_4V6X_0431/B2/1094:1096,
1/B2/1136:1140,
1/B2/1147:1151		No text annotation
J3_4V6X_0231/B2/1237:1244,
1/B2/1255:1266,
1/B2/1516:1520		No text annotation
homologous
J3_8P9A_078
J3_88451.1
J3_4V6X_0281/B2/1532:1536,
1/B2/1597:1604,
1/B2/1635:1638		No text annotation
homologous
J3_8C3A_044
NA
J4_4V6X_0021/A5/196:199,
1/A5/215:222,
1/A5/226:228,
1/A5/240:244		No text annotation
J4_4V6X_0051/A5/2406:2410,
1/A5/2434:2439,
1/A5/2538:2539,
1/A5/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_4V6X_0081/A5/3634:3638,
1/A5/3650:3654,
1/A5/3690:3694,
1/A5/3821:3826		No text annotation
homologous
J4_8C3A_006
NA
J4_4V6X_0091/A5/3696:3698,
1/A5/3752:3753,
1/A5/3771:3780,
1/A5/3814:3819		No text annotation
homologous
J4_8C3A_007
NA
J4_4V6X_0161/A5/4231:4235,
1/A5/4289:4293,
1/A5/4317:4319,
1/A5/4328:4330		No text annotation
homologous
J4_8CRE_008
NA
J4_4V6X_0111/A5/4587:4590,
1/A5/4620:4621,
1/A5/4676:4678,
1/A5/4712:4715		No text annotation
J4_4V6X_0131/B2/671:673,
1/B2/1032:1037,
1/B2/1078:1089,
1/B2/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_14595.1
J4_4V6X_0171/BC/7:10,
1/BC/24:26,
1/BC/42:49,
1/BC/63:65		No text annotation
J5_4V6X_0021/A5/1335:1340,
1/A5/1516:1519,
1/A5/1658:1661,
1/A5/2288:2290,
1/A5/2345:2351		No text annotation
homologous
J5_8C3A_002
NA
J5_4V6X_0111/A5/3903:3910,
1/A5/4392:4400,
1/A5/4444:4453,
1/A5/4528:4534,
1/A5/4552:4557		No text annotation
J5_4V6X_0051/A5/3920:3923,
1/A5/4188:4191,
1/A5/4204:4205,
1/A5/4227:4228,
1/A5/4375:4381		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J5_4V6X_0061/B2/30:34,
1/B2/521:527,
1/B2/558:565,
1/B2/585:595,
1/B2/641:644		No text annotation
J5_4V6X_0071/B2/53:56,
1/B2/89:96,
1/B2/434:436,
1/B2/457:459,
1/B2/470:474		No text annotation
homologous
J5_8C3A_020
NA
J6_4V6X_0011/A5/21:27,
1/A5/55:67,
1/A5/74:78,
1/A5/105:109,
1/A5/332:342,
1/A8/32:35		No text annotation
J6_4V6X_0021/A5/1352:1355,
1/A5/1384:1388,
1/A5/1395:1399,
1/A5/1418:1421,
1/A5/1464:1466,
1/A5/1499:1504		No text annotation
J7_4V6X_0011/A5/1666:1671,
1/A5/1684:1685,
1/A5/1852:1855,
1/A5/1879:1884,
1/A5/1895:1899,
1/A5/2077:2078,
1/A5/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_4V6X_001No text annotation
J3_4V6X_002No text annotation
J3_4V6X_031No text annotation
J3_4V6X_032No text annotation
J3_4V6X_004No text annotation
J3_4V6X_006No text annotation
J3_4V6X_046No text annotation
J3_4V6X_033No text annotation
J3_4V6X_007No text annotation
J3_4V6X_010No text annotation
J3_4V6X_034No text annotation
J3_4V6X_011No text annotation
J3_4V6X_015No text annotation
J3_4V6X_017No text annotation
J3_4V6X_041No text annotation
J3_4V6X_047No text annotation
J3_4V6X_018No text annotation
J3_4V6X_042No text annotation
J3_4V6X_020No text annotation
J3_4V6X_021No text annotation
J3_4V6X_022No text annotation
J3_4V6X_024No text annotation
J3_4V6X_025No text annotation
J3_4V6X_044No text annotation
J3_4V6X_026No text annotation
J3_4V6X_027No text annotation
J3_4V6X_045No text annotation
J4_4V6X_001No text annotation
J4_4V6X_003No text annotation
J4_4V6X_004No text annotation
J4_4V6X_015No text annotation
J4_4V6X_006No text annotation
J4_4V6X_007No text annotation
J4_4V6X_010No text annotation
J4_4V6X_012No text annotation
J4_4V6X_014No text annotation
J5_4V6X_001No text annotation
J5_4V6X_003No text annotation
J5_4V6X_004No text annotation
J5_4V6X_008No text annotation
J5_4V6X_009No text annotation
J5_4V6X_010No text annotation

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