HL_4V6X_009
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 4V6X|1|A5|G|315, 4V6X|1|A5|U|316
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6X_009 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1998
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
4V6X|1|A5|G|314
4V6X|1|A5|G|315
4V6X|1|A5|U|316
4V6X|1|A5|A|317
4V6X|1|A5|A|318
4V6X|1|A5|A|319
4V6X|1|A5|C|320
4V6X|1|A5|U|321
4V6X|1|A5|C|322
4V6X|1|A5|C|323
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain CL
- 60S ribosomal protein L13
- Chain CN
- 60S ribosomal protein L15
- Chain Ca
- 60S ribosomal protein L27a
- Chain Ci
- 60S ribosomal protein L36
- Chain Co
- 60S ribosomal protein L36a
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