HL_4V6X_020

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_020 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.3532

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

4V6X|1|A5|C|1436
4V6X|1|A5|C|1437
4V6X|1|A5|U|1438
4V6X|1|A5|C|1439
4V6X|1|A5|U|1440
4V6X|1|A5|C|1441
4V6X|1|A5|C|1442
4V6X|1|A5|A|1443
4V6X|1|A5|G|1444
4V6X|1|A5|U|1445
4V6X|1|A5|C|1446
4V6X|1|A5|C|1447
4V6X|1|A5|G|1448

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CF

60S ribosomal protein L7

Chain CQ

60S ribosomal protein L18